CuGenDBv2

Gene ID	Tan0013608
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG01:95730151..95731223
RNA-Seq Expression	Tan0013608
Synteny	Tan0013608
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

7.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

7.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

7.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

7.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

7.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

A0A5A7TU93 Gag/pol protein

3.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

A0A5A7TWB9 Gag/pol protein

3.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

A0A5D3CPJ6 Gag/pol protein

3.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

A0A5D3CSZ6 Gag/pol protein

3.8e-75

65.37

Show/hide

Query:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM
        +N +NT+L++DDL+FVL EECPQVP +NA+R V + Y+RW KAN+KA+ YILAS+S+ LAKKHE M+T +EIMDS+Q MFGQ S Q +H+ALKYI+N+RM
Subjt:  ENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRM

Query:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS
         EG SV +HVL+MMVHFN+AE NGA IDE+SQVSFILE+LP SFLQFRSN VMNK+ + LT+LLNELQTF+S+MKI+G KGE NVA   R +HRGSTSG+
Subjt:  PEGTSVWDHVLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVA--NRSYHRGSTSGS

Query:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA
        K++ S S N K KK   KK G+G +A+ AAA
Subjt:  KTVASISSNLKGKKKNMKKVGKGKRADKAAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAACAAACTCAACACTATATTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTTGTGATGC
ATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCAAGTATGTCTGACAGATTAGCCAAGAAGCATGAGGGCATGATGACCACTAAGGAAATCA
TGGATTCAGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGCCCTAAAGTACATTTTCAACTCGAGGATGCCAGAGGGTACATCTGTTTGGGATCAT
GTCCTGGATATGATGGTACACTTTAATATCGCGGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAGGTCAGCTTCATTCTGGAAACTCTTCCAAATAGTTTCCTTCA
GTTTAGAAGTAATGTTGTTATGAACAAGCTTACTTTTAATCTTACCTCCCTTCTGAATGAACTCCAGACCTTTCAATCTATGATGAAAATTCAGGGATCGAAAGGTGAGG
AAAATGTTGCCAATAGGAGTTATCATAGAGGTTCGACCTCTGGATCAAAAACAGTGGCTTCAATTTCTTCTAACTTGAAAGGGAAGAAGAAGAATATGAAGAAGGTTGGT
AAAGGGAAACGAGCTGACAAAGCTGCCGCCTAG

mRNA sequence

Show/hide mRNA sequence

TAAATTTTCAGCAAAAATGTCTAGCTCTATAATTTCCTTATTGGGTGCGGAAAAGTTAACCGGAGAGAATATGATGACATGGAAAACAAACTCAACACTATATTGGTAGT
GGATGATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTTGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGG
CCAAGGTCTACATTTTGGCAAGTATGTCTGACAGATTAGCCAAGAAGCATGAGGGCATGATGACCACTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAACAG
TCCACACAGGCCCGACACAATGCCCTAAAGTACATTTTCAACTCGAGGATGCCAGAGGGTACATCTGTTTGGGATCATGTCCTGGATATGATGGTACACTTTAATATCGC
GGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAGGTCAGCTTCATTCTGGAAACTCTTCCAAATAGTTTCCTTCAGTTTAGAAGTAATGTTGTTATGAACAAGCTTA
CTTTTAATCTTACCTCCCTTCTGAATGAACTCCAGACCTTTCAATCTATGATGAAAATTCAGGGATCGAAAGGTGAGGAAAATGTTGCCAATAGGAGTTATCATAGAGGT
TCGACCTCTGGATCAAAAACAGTGGCTTCAATTTCTTCTAACTTGAAAGGGAAGAAGAAGAATATGAAGAAGGTTGGTAAAGGGAAACGAGCTGACAAAGCTGCCGCCTA
GAAGGACAAGAAAGTCAAAGAAGTTGCTGACAAAGGAAAGTGTATCCACTGCAACGAAGACGGGCATTGGAAACGGAACTGTCCGAAGTACATTGCAGAAAAGAAGAAGG
AAGGTAAATATGATTTACTTTGCTTAGAAGCTTGTTTAGTGGATAATGATAAAACTGCTTGGATACTTGATTCAGGCGCCACTAATCATTTTTGTTCTTATTTCCAGGGA
ATTGATTCCTGGCAGCAACCACAAAAAGGAGAGATAACACTCCGGGTTGAAAGTGAGAAGTCGTCTCAGCTGTAGCAGTAGGC

Protein sequence

Show/hide protein sequence

MENKLNTILVVDDLKFVLTEECPQVPGSNASRNVCDAYDRWIKANDKAKVYILASMSDRLAKKHEGMMTTKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVWDH
VLDMMVHFNIAESNGASIDESSQVSFILETLPNSFLQFRSNVVMNKLTFNLTSLLNELQTFQSMMKIQGSKGEENVANRSYHRGSTSGSKTVASISSNLKGKKKNMKKVG
KGKRADKAAA

Tan0013608 (gene) of Snake gourd v1 genome