| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 1.5e-148 | 62.5 | Show/hide |
Query: MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGT
+NKIE+NLTTLLNELQ F++L SKGKE EANV VT +KF+RGSSS K GPS K + K KGKG+ P+ +K K KCFHC G +
Subjt: MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGT
Query: ARNTLQKRKLRRKT-----------------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPG
L ++K + T +ETSSW++L +GEITL+VGTGEVVSA+AVG + L F+DR+++L++VL VP
Subjt: ARNTLQKRKLRRKT-----------------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPG
Query: IKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL
+KRNL+SI+C+LEH+Y +SF NE FI +G++ICSA E NLY LRPT +LNTEMF+T +TQNK+QK+S + YLWHLRLGHINLN+IERL+KSG+L
Subjt: IKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL
Query: SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKT
+QLE+NSLPPCESCLEGKMTKR F+ KG RAK PLEL+HSDLCGPMNVKARGGYEYFISFIDD+SRYG++YL+HHKSE+ EKFK+YKAEVEN +GKTIKT
Subjt: SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKT
Query: LRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
LRSDRGGEYMD +FQDY+IE GI SQLSAP TPQQNGVSERRNRTLLDMVRS+MSY
Subjt: LRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa] | 4.5e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 4.5e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa] | 4.5e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 4.5e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 2.2e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| A0A5A7V4M1 Gag/pol protein | 2.2e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| A0A5D3CPJ6 Gag/pol protein | 2.2e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| A0A5D3DS88 Gag/pol protein | 2.2e-148 | 64.57 | Show/hide |
Query: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
VMNKI Y LTTLLNELQTFESLMK KG++ EANV TS +KF RGS+SGTKS PS S NK +KKK K L A AK T+K CFHC G
Subjt: VMNKIEYNLTTLLNELQTFESLMKSKGKEKEANVVTS-KKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPHAKAKATEK-------CFHCGAFGT
Query: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
+ L ++K ++ K ET SSW+QL GE+T+RVGTG VVSA AVG ++L + F+LLENV +V
Subjt: GRGTARNTLQKRKLRRKTK------ET---------------------------SSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLV
Query: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
P +KRNL+S+ CLLE Y ++FN N+ FI K GV ICSAKLE NLYVLR K +LNTEMFKTA TQNKR K+SP + +LWHLRLGHINLN+IERL+K
Subjt: PGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSP--STYLWHLRLGHINLNKIERLIK
Query: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
+GLLS+LEENSLP CESCLEGKMTKRPF+ KG+RAKEPLEL+HSDLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSE LEKFK+YKAEVEN L K
Subjt: SGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGK
Query: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
TIKT RSDRGGEYMDL+FQ+Y++E GIVSQLSAPGTPQQNGVSERRNRTLLDMVRS+MSY
Subjt: TIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| E2GK51 Gag/pol protein (Fragment) | 7.5e-149 | 62.5 | Show/hide |
Query: MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGT
+NKIE+NLTTLLNELQ F++L SKGKE EANV VT +KF+RGSSS K GPS K + K KGKG+ P+ +K K KCFHC G +
Subjt: MNKIEYNLTTLLNELQTFESLMKSKGKEKEANV-VTSKKFLRGSSSGTKSGPSFSKNKSIQKKKKKDKGKGQLPH-AKAKATE---KCFHCGAFGTGRGT
Query: ARNTLQKRKLRRKT-----------------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPG
L ++K + T +ETSSW++L +GEITL+VGTGEVVSA+AVG + L F+DR+++L++VL VP
Subjt: ARNTLQKRKLRRKT-----------------------------------KETSSWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPG
Query: IKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL
+KRNL+SI+C+LEH+Y +SF NE FI +G++ICSA E NLY LRPT +LNTEMF+T +TQNK+QK+S + YLWHLRLGHINLN+IERL+KSG+L
Subjt: IKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLL
Query: SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKT
+QLE+NSLPPCESCLEGKMTKR F+ KG RAK PLEL+HSDLCGPMNVKARGGYEYFISFIDD+SRYG++YL+HHKSE+ EKFK+YKAEVEN +GKTIKT
Subjt: SQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKT
Query: LRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
LRSDRGGEYMD +FQDY+IE GI SQLSAP TPQQNGVSERRNRTLLDMVRS+MSY
Subjt: LRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMSY
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.3e-28 | 30.38 | Show/hide |
Query: GEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKR
GE + A G V+L D + LE+VL NL+S+ L E + F+ + ISK G+ + KN +L V +N + +
Subjt: GEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKR
Query: QKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLE-----ENSLPPCESCLEGKMTKRPFSEKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFISFID
K + LWH R GHI+ K+ + + + S E S CE CL GK + PF + + K PL ++HSD+CGP+ YF+ F+D
Subjt: QKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLE-----ENSLPPCESCLEGKMTKRPFSEKGYRA--KEPLELIHSDLCGPMNVKARGGYEYFISFID
Query: DYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMS
++ Y YL+ +KS+ F+ + A+ E + L D G EY+ + + ++ GI L+ P TPQ NGVSER RT+ + R+++S
Subjt: DYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLMS
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.2e-40 | 34.34 | Show/hide |
Query: VLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLN
++L++V VP ++ NL+S L Y+ F + + ++K + I LY + LN + S LWH R+GH++
Subjt: VLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLN
Query: KIERLIKSGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAE
++ L K L+S + ++ PC+ CL GK + F R L+L++SD+CGPM +++ GG +YF++FIDD SR ++Y++ K + + F+K+ A
Subjt: KIERLIKSGLLSQLEENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAE
Query: VENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLM
VE G+ +K LRSD GGEY F++Y HGI + + PGTPQ NGV+ER NRT+++ VRS++
Subjt: VENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSLM
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| Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein | 2.2e-20 | 26.69 | Show/hide |
Query: DGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEM
+ EI + + + A+G + F++ L P I +L+S+S L F N S G + + Y L K ++ + +
Subjt: DGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLEHMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLRPTEVKTILNTEM
Query: FK-TADTQNKRQKLSPSTY-LWHLRLGHINLNKIERLIKSGLLSQLEENSLP-------PCESCLEGKMTKRPFSEKGYRAK-----EPLELIHSDLCGP
K T + NK + ++ Y L H LGH N I++ +K ++ L+E+ + C CL GK TK KG R K EP + +H+D+ GP
Subjt: FK-TADTQNKRQKLSPSTY-LWHLRLGHINLNKIERLIKSGLLSQLEENSLP-------PCESCLEGKMTKRPFSEKGYRAK-----EPLELIHSDLCGP
Query: MNVKARGGYEYFISFIDDYSRYGYLYLMHHKSE--TLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRN
++ + YFISF D+ +R+ ++Y +H + E L F A ++N + ++ DRG EY + + GI + + + +GV+ER N
Subjt: MNVKARGGYEYFISFIDDYSRYGYLYLMHHKSE--TLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRN
Query: RTLLDMVRSLM
RTLL+ R+L+
Subjt: RTLLDMVRSLM
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.1e-27 | 29.62 | Show/hide |
Query: SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLR
S Q G + V G + G+ L + R + L N+L VP I +NL+S+ L + SF + GV + K + LY
Subjt: SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLR
Query: PTEVKTILNTEMFKTADTQNKRQKLSPSTYL----WHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDL
+ A +Q SPS+ WH RLGH + + +I + LS L + C CL K K PFS+ + PLE I+SD+
Subjt: PTEVKTILNTEMFKTADTQNKRQKLSPSTYL----WHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDL
Query: CGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERR
+ + Y Y++ F+D ++RY +LY + KS+ E F +K +EN I T SD GGE++ L +Y +HGI S P TP+ NG+SER+
Subjt: CGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERR
Query: NRTLLDMVRSLMSY
+R +++ +L+S+
Subjt: NRTLLDMVRSLMSY
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.3e-28 | 30 | Show/hide |
Query: SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLR
S+ Q G + + G + G+ L R + L VL VP I +NL+S+ L + SF + GV + K + LY
Subjt: SWQQLADGEITLRVGTGEVVSAKAVGAVKLLFRDRFVLLENVLLVPGIKRNLVSISCLLE------HMYKVSFNHNEAFISKRGVRICSAKLEKNLYVLR
Query: PTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPM
+ + MF + ++ WH RLGH +L + +I + L L + L C C K K PFS + +PLE I+SD+
Subjt: PTEVKTILNTEMFKTADTQNKRQKLSPSTYLWHLRLGHINLNKIERLIKSGLLSQLE-ENSLPPCESCLEGKMTKRPFSEKGYRAKEPLELIHSDLCGPM
Query: NVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTL
+ + Y Y++ F+D ++RY +LY + KS+ + F +K+ VEN I TL SD GGE++ LR DY+ +HGI S P TP+ NG+SER++R +
Subjt: NVKARGGYEYFISFIDDYSRYGYLYLMHHKSETLEKFKKYKAEVENTLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIVSQLSAPGTPQQNGVSERRNRTL
Query: LDMVRSLMSY
++M +L+S+
Subjt: LDMVRSLMSY
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