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Tan0013668 (gene) of Snake gourd v1 genome

Gene IDTan0013668
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L35
Genome locationLG09:67694647..67697011
RNA-Seq ExpressionTan0013668
SyntenyTan0013668
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443834.1 PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]5.0e-6284.87Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS AVSFG RFSPLCSRPS RVSHTSV LASFNK NSL+L SSHNISGFG+  LQKP HI +P+SQ+ +P TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022135558.1 50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]8.3e-6591.5Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR
        MASAST VSFG RFSPLCSRPSVRVSH SVRLA SFNK NSLRLGSS NISGFG+ALLQK  HI AP+SQV +PLTVVAAKGYKMKTHKASAKRFRVTGR
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022933399.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata]5.0e-6286.84Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASASTA  FG RF+PLCSRPS  VS +S+RLASFNKANSLRL SSHNISG G+ALLQK C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_023516182.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]4.6e-6387.5Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS   SFG RFSPLCSR SVRVS +SVRL S NKA SLRL SSHNIS FG+AL+QKPCHI APSS++R+P TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_023531155.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-6286.84Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MAS S AV FG RF+PLCSRPS  VSH+S+RLASFNKANSLRL SSHNISG G+ALLQK C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

TrEMBL top hitse value%identityAlignment
A0A0A0LYX0 50S ribosomal protein L351.0e-6084.21Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS AVSFG RFSPLCSRPS RVSHTSV +AS NK NSL+L SSHNISGFG   LQKP HI +P+SQ+R+P TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLL KKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A1S3B9R8 50S ribosomal protein L352.4e-6284.87Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS AVSFG RFSPLCSRPS RVSHTSV LASFNK NSL+L SSHNISGFG+  LQKP HI +P+SQ+ +P TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1C550 50S ribosomal protein L354.0e-6591.5Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR
        MASAST VSFG RFSPLCSRPSVRVSH SVRLA SFNK NSLRLGSS NISGFG+ALLQK  HI AP+SQV +PLTVVAAKGYKMKTHKASAKRFRVTGR
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLA-SFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1EZN8 50S ribosomal protein L352.4e-6286.84Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASASTA  FG RF+PLCSRPS  VS +S+RLASFNKANSLRL SSHNISG G+ALLQK C I AP  QV +PLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1JDG6 50S ribosomal protein L353.2e-6286.84Show/hide
Query:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS +VSFG RFSPLCSR SVRVS  SVRL S NKA SLRL SSHN+S FG+ALLQKP HI APSS++ +P TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

SwissProt top hitse value%identityAlignment
B2J0D1 50S ribosomal protein L355.1e-0957.14Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

P23326 50S ribosomal protein L35, chloroplastic3.3e-3259.49Show/hide
Query:  MASASTAVSFGFRFSPL-CSRPSVRVSHT-SVRLASFNK--ANSLRLGSSHNISGF---GIALLQKPCHIAAPSSQVRSP-LTVVAAKGYKMKTHKASAK
        MA AS   +  F+   L  S PS R S    + L  FNK   ++L L SS +IS      I L  K       S    SP  TV AAKGYKMKTHKASAK
Subjt:  MASASTAVSFGFRFSPL-CSRPSVRVSHT-SVRLASFNK--ANSLRLGSSHNISGF---GIALLQKPCHIAAPSSQVRSP-LTVVAAKGYKMKTHKASAK

Query:  RFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ
        RFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Subjt:  RFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ

Q3M7I2 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Q8VZ55 50S ribosomal protein L35, chloroplastic1.2e-3461.84Show/hide
Query:  MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR
        MAS S A V+  F      S P V +  +SV  A+        L SSH+ISG    L  K   +A+P+SQ     TV A KGYKMKTHKASAKRFRVTGR
Subjt:  MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA

Q8YRL9 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L358.6e-3661.84Show/hide
Query:  MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR
        MAS S A V+  F      S P V +  +SV  A+        L SSH+ISG    L  K   +A+P+SQ     TV A KGYKMKTHKASAKRFRVTGR
Subjt:  MASASTA-VSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTGCTTCGACGGCGGTGTCCTTTGGCTTTAGGTTTTCCCCACTGTGCTCCCGCCCATCAGTTCGCGTCTCTCATACTTCCGTCCGGCTCGCTTCGTTCAACAA
GGCGAACTCATTGAGGCTCGGTTCCTCCCACAACATTTCCGGGTTTGGAATCGCTCTCCTTCAGAAGCCATGTCACATTGCCGCTCCCAGTTCTCAAGTTCGTTCTCCCC
TCACTGTTGTCGCTGCCAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCAAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAGGAGAGCAGGAAAGCAG
CATTTACTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCATACCTGAAGGT
GAATAGGCAGGCTAAGTAG
mRNA sequenceShow/hide mRNA sequence
AAAATAAAGAAATCGGAAAAAAAAAAAGCTCCTTCACTTATCCGCACAGGAGGCCGAGTCTAAGGCTCGTAGAGATTGGCAGAAAGAAGAAGAAGAAGAAAGACGAGACG
CTTCGAAGCTTTAGTTATGGCATCTGCTTCGACGGCGGTGTCCTTTGGCTTTAGGTTTTCCCCACTGTGCTCCCGCCCATCAGTTCGCGTCTCTCATACTTCCGTCCGGC
TCGCTTCGTTCAACAAGGCGAACTCATTGAGGCTCGGTTCCTCCCACAACATTTCCGGGTTTGGAATCGCTCTCCTTCAGAAGCCATGTCACATTGCCGCTCCCAGTTCT
CAAGTTCGTTCTCCCCTCACTGTTGTCGCTGCCAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCAAAGCGATTCAGGGTGACGGGTCGGGGGAAAATTGTTCGGAG
GAGAGCAGGAAAGCAGCATTTACTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTT
TGCCATACCTGAAGGTGAATAGGCAGGCTAAGTAGAAGCCATCACCCCACCCCACTAGATCCTTGGCTGTATTGTATTTAGTTTATTTGTAACCAAATGATTTTCAATTT
TCCAGAACTCATCAAAGGGAAAAGTTTGATTGTTTAAGAATATTATTTGTCTAAATATATTCCATCAGTTGATAA
Protein sequenceShow/hide protein sequence
MASASTAVSFGFRFSPLCSRPSVRVSHTSVRLASFNKANSLRLGSSHNISGFGIALLQKPCHIAAPSSQVRSPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ
HLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK