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Tan0013707 (gene) of Snake gourd v1 genome

Gene IDTan0013707
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
Genome locationLG07:13064644..13068038
RNA-Seq ExpressionTan0013707
SyntenyTan0013707
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]8.1e-2440.31Show/hide
Query:  IVDLKVLAIV---QNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--LPID
        ++D K+L +    Q + +    +V   EG  ++     +  K LTIFY EKP  P    KPITI VPAPFEYKSSKAVPW YE KVTV  ++SS  LP+D
Subjt:  IVDLKVLAIV---QNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--LPID

Query:  NITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPGWRIVNQSIRKKEFCLFHLESYEDYAIATVIED
        NIT V GLT +GRCYTPD L+K         ++   TS  N ++  E   EK + D            KK     H + +++   A V++D
Subjt:  NITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPGWRIVNQSIRKKEFCLFHLESYEDYAIATVIED

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.8e-2448.1Show/hide
Query:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--S
        F  +   ++D K+L    +      N V+ I  L ++    ++  KPLTIFYREKP  P+   KP  I VP PFEYKSSKAVPW YE KVTV  ++S  S
Subjt:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--S

Query:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
        LP+DNIT V GLTR+GRCYTPD L+K+  N+   EK   K S    ++ KE V E KK
Subjt:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.3e-2643.37Show/hide
Query:  SPFSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLS-SKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTV--NSE
        S F ++   ++DLK+L + Q+   + +  +D +E +S ++        KPLT+ YREKP +P+   +PITIQVPAPFEY SSKAVPW YE KVTV   ++
Subjt:  SPFSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLS-SKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTV--NSE

Query:  MSSLPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPG
         SSLP+DNIT   G+TR+GRCYTP+ L+K           +   ST+  ++  E  NEK + D  G
Subjt:  MSSLPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPG

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.2e-0353.57Show/hide
Query:  EDLSSEMEKTRKDIEKLREKLDVILIALEKGKMVIDGTQTSKVVNDPLGVNFTPQY
        +D  SE EKTRKDIE+LREKLD IL+ALEKGK +    +TS  +++P    F P +
Subjt:  EDLSSEMEKTRKDIEKLREKLDVILIALEKGKMVIDGTQTSKVVNDPLGVNFTPQY

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.5e-2550.99Show/hide
Query:  IVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--SLPIDNIT
        ++D K+L +  +      N V+ I  L ++    ++  K LTIFYREKP  P+   KPITI VPAPFEYKSSKAVPW YE KVTV  ++S  SLP+DNIT
Subjt:  IVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--SLPIDNIT

Query:  EVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
         V GLTR+GRCYTPD L+K+  N+   EK   K S    ++ KE V E KK
Subjt:  EVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.5e-2548.73Show/hide
Query:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--
        F  +   ++D K+L +  +      N V+ +         L    K LTIFY EKP  P    KPITI VPAPFEYKSSKAVPW Y+ KVTV  ++SS  
Subjt:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--

Query:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
        LPIDNIT V GLTR+GRCYTPD L+K C N+   EK   K S    ++ KE V E KK
Subjt:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H3.9e-2440.31Show/hide
Query:  IVDLKVLAIV---QNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--LPID
        ++D K+L +    Q + +    +V   EG  ++     +  K LTIFY EKP  P    KPITI VPAPFEYKSSKAVPW YE KVTV  ++SS  LP+D
Subjt:  IVDLKVLAIV---QNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--LPID

Query:  NITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPGWRIVNQSIRKKEFCLFHLESYEDYAIATVIED
        NIT V GLT +GRCYTPD L+K         ++   TS  N ++  E   EK + D            KK     H + +++   A V++D
Subjt:  NITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPGWRIVNQSIRKKEFCLFHLESYEDYAIATVIED

A0A6J1D099 Ribonuclease H1.4e-2448.1Show/hide
Query:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--S
        F  +   ++D K+L    +      N V+ I  L ++    ++  KPLTIFYREKP  P+   KP  I VP PFEYKSSKAVPW YE KVTV  ++S  S
Subjt:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--S

Query:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
        LP+DNIT V GLTR+GRCYTPD L+K+  N+   EK   K S    ++ KE V E KK
Subjt:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-2643.37Show/hide
Query:  SPFSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLS-SKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTV--NSE
        S F ++   ++DLK+L + Q+   + +  +D +E +S ++        KPLT+ YREKP +P+   +PITIQVPAPFEY SSKAVPW YE KVTV   ++
Subjt:  SPFSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLS-SKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTV--NSE

Query:  MSSLPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPG
         SSLP+DNIT   G+TR+GRCYTP+ L+K           +   ST+  ++  E  NEK + D  G
Subjt:  MSSLPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKKNDYPG

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222315.9e-0453.57Show/hide
Query:  EDLSSEMEKTRKDIEKLREKLDVILIALEKGKMVIDGTQTSKVVNDPLGVNFTPQY
        +D  SE EKTRKDIE+LREKLD IL+ALEKGK +    +TS  +++P    F P +
Subjt:  EDLSSEMEKTRKDIEKLREKLDVILIALEKGKMVIDGTQTSKVVNDPLGVNFTPQY

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222317.2e-2650.99Show/hide
Query:  IVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--SLPIDNIT
        ++D K+L +  +      N V+ I  L ++    ++  K LTIFYREKP  P+   KPITI VPAPFEYKSSKAVPW YE KVTV  ++S  SLP+DNIT
Subjt:  IVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMS--SLPIDNIT

Query:  EVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
         V GLTR+GRCYTPD L+K+  N+   EK   K S    ++ KE V E KK
Subjt:  EVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

A0A6J1E2J7 Ribonuclease H1.2e-2548.73Show/hide
Query:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--
        F  +   ++D K+L +  +      N V+ +         L    K LTIFY EKP  P    KPITI VPAPFEYKSSKAVPW Y+ KVTV  ++SS  
Subjt:  FSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKVGLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSS--

Query:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK
        LPIDNIT V GLTR+GRCYTPD L+K C N+   EK   K S    ++ KE V E KK
Subjt:  LPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKETVNEKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCTAAGCTCAGAAATGGAAAAAACAAGGAAGGATATCGAGAAATTACGAGAAAAGTTAGATGTCATTCTTATAGCCTTGGAAAAAGGCAAGATGGTAATTGA
TGGTACCCAAACTAGCAAAGTGGTTAACGATCCTCTCGGGGTTAACTTTACCCCGCAGTATACGACGAACAATCCTTTGTCATTCTTTGGATCAGTGTCACCATTTTCGC
AAGAGGGTCCAAGAATTGTGGACTTGAAGGTTCTCGCTATTGTACAAAATCGTGACTTGTATTCGGATAATGAGGTGGACACTATAGAGGGACTTTCCTCTAAAAAGGTT
GGTTTAAATGTGCCTTTTAAACCTCTCACAATCTTTTATCGTGAAAAGCCCACTCTACCCACTACTGACCTGAAGCCAATCACGATCCAGGTGCCAGCTCCTTTTGAGTA
CAAAAGTTCAAAAGCAGTACCTTGGAGCTATGAGCATAAGGTGACTGTCAACTCAGAAATGTCATCGCTTCCTATCGACAATATCACTGAAGTATGGGGTCTAACACGAA
GTGGAAGATGTTATACTCCGGATCAATTAATGAAGCAGTGTGGAAATAAGGGAAAAAAGGAAAAGTTGGATGCTAAAACTAGTACAAGCAATGATGATGAGCTCAAGGAA
ACAGTGAATGAGAAAAAGAAAAACGATTACCCAGGCTGGAGAATCGTGAACCAAAGCATTAGAAAGAAGGAATTTTGCCTCTTTCATCTAGAGAGTTATGAAGATTATGC
AATTGCAACCGTGATTGAAGATGAAGAAAAAGGCCTGTGGATCTACCCATGTCCAGAGAACTTCCAACTTGCCAATTTGCGTGTTATTGAATCACCGTTATTTGCTGTTA
AAATGTCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACCTAAGCTCAGAAATGGAAAAAACAAGGAAGGATATCGAGAAATTACGAGAAAAGTTAGATGTCATTCTTATAGCCTTGGAAAAAGGCAAGATGGTAATTGA
TGGTACCCAAACTAGCAAAGTGGTTAACGATCCTCTCGGGGTTAACTTTACCCCGCAGTATACGACGAACAATCCTTTGTCATTCTTTGGATCAGTGTCACCATTTTCGC
AAGAGGGTCCAAGAATTGTGGACTTGAAGGTTCTCGCTATTGTACAAAATCGTGACTTGTATTCGGATAATGAGGTGGACACTATAGAGGGACTTTCCTCTAAAAAGGTT
GGTTTAAATGTGCCTTTTAAACCTCTCACAATCTTTTATCGTGAAAAGCCCACTCTACCCACTACTGACCTGAAGCCAATCACGATCCAGGTGCCAGCTCCTTTTGAGTA
CAAAAGTTCAAAAGCAGTACCTTGGAGCTATGAGCATAAGGTGACTGTCAACTCAGAAATGTCATCGCTTCCTATCGACAATATCACTGAAGTATGGGGTCTAACACGAA
GTGGAAGATGTTATACTCCGGATCAATTAATGAAGCAGTGTGGAAATAAGGGAAAAAAGGAAAAGTTGGATGCTAAAACTAGTACAAGCAATGATGATGAGCTCAAGGAA
ACAGTGAATGAGAAAAAGAAAAACGATTACCCAGGCTGGAGAATCGTGAACCAAAGCATTAGAAAGAAGGAATTTTGCCTCTTTCATCTAGAGAGTTATGAAGATTATGC
AATTGCAACCGTGATTGAAGATGAAGAAAAAGGCCTGTGGATCTACCCATGTCCAGAGAACTTCCAACTTGCCAATTTGCGTGTTATTGAATCACCGTTATTTGCTGTTA
AAATGTCAAAGTAA
Protein sequenceShow/hide protein sequence
MEDLSSEMEKTRKDIEKLREKLDVILIALEKGKMVIDGTQTSKVVNDPLGVNFTPQYTTNNPLSFFGSVSPFSQEGPRIVDLKVLAIVQNRDLYSDNEVDTIEGLSSKKV
GLNVPFKPLTIFYREKPTLPTTDLKPITIQVPAPFEYKSSKAVPWSYEHKVTVNSEMSSLPIDNITEVWGLTRSGRCYTPDQLMKQCGNKGKKEKLDAKTSTSNDDELKE
TVNEKKKNDYPGWRIVNQSIRKKEFCLFHLESYEDYAIATVIEDEEKGLWIYPCPENFQLANLRVIESPLFAVKMSK