; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013754 (gene) of Snake gourd v1 genome

Gene IDTan0013754
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG01:116539072..116539602
RNA-Seq ExpressionTan0013754
SyntenyTan0013754
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]7.7e-2243.51Show/hide
Query:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSEDEPQGLL--------------LPNPEHDIWMAVDQLLMGW
        NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EGHLTGE+ CP   I   I  S+ E  G                  NP+ D W+    LL+GW
Subjt:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSEDEPQGLL--------------LPNPEHDIWMAVDQLLMGW

Query:  LYNSMTIEVASQVTSCGSSQELWAALQDFYG
        +YNSMT EVA Q+    ++++LW A+QD +G
Subjt:  LYNSMTIEVASQVTSCGSSQELWAALQDFYG

XP_016901223.1 PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]4.5e-2239.72Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQ----------------GLLLPNPEHDIWM
        V S      NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EG+LTGE+ CP   I    +E + +                     NP+ D W+
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQ----------------GLLLPNPEHDIWM

Query:  AVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGV
            LL+GW+YNSMT EVA Q+    ++++LW A+QD +GV
Subjt:  AVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGV

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]1.7e-2142.42Show/hide
Query:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS------EDEPQGLL---------LPNPEHDIWMAVDQLLMGWL
        NP    +LNQ T++KLDR N+L+W+ +ALP+L+ YKLEGHLT E+ CP   ++   S      E+     +         + NP  + W+  D LL+GWL
Subjt:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS------EDEPQGLL---------LPNPEHDIWMAVDQLLMGWL

Query:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ
        YNSMT +VA Q+    + ++LW A QDF+GVQ
Subjt:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.0e-2548.48Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWL
        V SGA+   +P    LLNQ TSIK+DR NFL+WQN+ALP+LRSYKL  +LTG+  CP   +V   +    +G          NP ++ W+ VD+LL+GWL
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWL

Query:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ
        YNSM  +VA QV    +S+ELW A+Q+ +GVQ
Subjt:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]4.4e-2544.62Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPP--SEDEPQGLLLPNPEHDIWMAVDQLLMGWLYNSM
        + S      NP    +LNQ  S+KLDR N+L+WQ +ALP+L+SYKL+GHLT E+ CP   I+ P   +          NP+ D W+  D LL+GW+YNSM
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPP--SEDEPQGLLLPNPEHDIWMAVDQLLMGWLYNSM

Query:  TIEVASQVTSCGSSQELWAALQDFYGVQFK
        T EVA Q+    ++++LW A+QD +GVQ +
Subjt:  TIEVASQVTSCGSSQELWAALQDFYGVQFK

TrEMBL top hitse value%identityAlignment
A0A1S4DZ26 uncharacterized protein LOC1079912022.2e-2239.72Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQ----------------GLLLPNPEHDIWM
        V S      NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EG+LTGE+ CP   I    +E + +                     NP+ D W+
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQ----------------GLLLPNPEHDIWM

Query:  AVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGV
            LL+GW+YNSMT EVA Q+    ++++LW A+QD +GV
Subjt:  AVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGV

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X48.3e-2242.42Show/hide
Query:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS------EDEPQGLL---------LPNPEHDIWMAVDQLLMGWL
        NP    +LNQ T++KLDR N+L+W+ +ALP+L+ YKLEGHLT E+ CP   ++   S      E+     +         + NP  + W+  D LL+GWL
Subjt:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPS------EDEPQGLL---------LPNPEHDIWMAVDQLLMGWL

Query:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ
        YNSMT +VA Q+    + ++LW A QDF+GVQ
Subjt:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ

A0A5D3BVJ1 Uncharacterized protein3.7e-2243.51Show/hide
Query:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSEDEPQGLL--------------LPNPEHDIWMAVDQLLMGW
        NP    LLNQ +S+KLDR N+L+W+ +ALP+++SYK EGHLTGE+ CP   I   I  S+ E  G                  NP+ D W+    LL+GW
Subjt:  NPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIV--IPPSEDEPQGLL--------------LPNPEHDIWMAVDQLLMGW

Query:  LYNSMTIEVASQVTSCGSSQELWAALQDFYG
        +YNSMT EVA Q+    ++++LW A+QD +G
Subjt:  LYNSMTIEVASQVTSCGSSQELWAALQDFYG

A0A6J1DCW4 uncharacterized protein LOC1110195989.5e-2648.48Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWL
        V SGA+   +P    LLNQ TSIK+DR NFL+WQN+ALP+LRSYKL  +LTG+  CP   +V   +    +G          NP ++ W+ VD+LL+GWL
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP------NPEHDIWMAVDQLLMGWL

Query:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ
        YNSM  +VA QV    +S+ELW A+Q+ +GVQ
Subjt:  YNSMTIEVASQVTSCGSSQELWAALQDFYGVQ

A0A803PAZ1 Uncharacterized protein3.7e-2243.2Show/hide
Query:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP-NPEHDIWMAVDQLLMGWLYNSMT
        V  G+    N SF N L Q  SIKLDRNN+ +W+N+   ++R ++LEG++ G   CP   +  P + +   G  L  NPE++ W+  DQLLMGWLY SMT
Subjt:  VRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLP-NPEHDIWMAVDQLLMGWLYNSMT

Query:  IEVASQVTSCGSSQELWAALQDFYG
          +A++V  C S++ LW AL++ YG
Subjt:  IEVASQVTSCGSSQELWAALQDFYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACACCCAAGAATCCTCGACTTCTCAAGCTCACTCCCCTGTCCTCAAGACTCCTGGACCTGTCCACATCCCAAAAAACCCAAATGCCTACCAGGTGAGATCGGG
AGCCATACCGGTAGGCAACCCTTCCTTCACAAATCTCCTCAATCAAGCCACTTCTATCAAGCTTGACCGAAATAACTTCCTAGTATGGCAAAACATTGCTCTTCCATTAC
TCAGGAGTTACAAACTAGAAGGACATCTTACCGGTGAATCTATCTGTCCTGAAATGTCAATAGTCATCCCTCCGTCTGAAGACGAACCACAAGGTTTACTCCTACCGAAT
CCAGAGCACGATATTTGGATGGCAGTTGATCAACTACTTATGGGGTGGCTCTATAACTCAATGACCATTGAAGTGGCTTCTCAGGTTACTAGCTGCGGATCATCACAAGA
ATTATGGGCTGCCTTGCAAGACTTCTATGGAGTCCAATTCAAAAGGATTACCTGTAGAGAATGGTTCAGCAAACCAGGAAAGGAAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACACCCAAGAATCCTCGACTTCTCAAGCTCACTCCCCTGTCCTCAAGACTCCTGGACCTGTCCACATCCCAAAAAACCCAAATGCCTACCAGGTGAGATCGGG
AGCCATACCGGTAGGCAACCCTTCCTTCACAAATCTCCTCAATCAAGCCACTTCTATCAAGCTTGACCGAAATAACTTCCTAGTATGGCAAAACATTGCTCTTCCATTAC
TCAGGAGTTACAAACTAGAAGGACATCTTACCGGTGAATCTATCTGTCCTGAAATGTCAATAGTCATCCCTCCGTCTGAAGACGAACCACAAGGTTTACTCCTACCGAAT
CCAGAGCACGATATTTGGATGGCAGTTGATCAACTACTTATGGGGTGGCTCTATAACTCAATGACCATTGAAGTGGCTTCTCAGGTTACTAGCTGCGGATCATCACAAGA
ATTATGGGCTGCCTTGCAAGACTTCTATGGAGTCCAATTCAAAAGGATTACCTGTAGAGAATGGTTCAGCAAACCAGGAAAGGAAGTATGA
Protein sequenceShow/hide protein sequence
MDNTQESSTSQAHSPVLKTPGPVHIPKNPNAYQVRSGAIPVGNPSFTNLLNQATSIKLDRNNFLVWQNIALPLLRSYKLEGHLTGESICPEMSIVIPPSEDEPQGLLLPN
PEHDIWMAVDQLLMGWLYNSMTIEVASQVTSCGSSQELWAALQDFYGVQFKRITCREWFSKPGKEV