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Tan0013785 (gene) of Snake gourd v1 genome

Gene IDTan0013785
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG06:5118486..5121957
RNA-Seq ExpressionTan0013785
SyntenyTan0013785
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW22719.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.7e-1138.54Show/hide
Query:  SQDDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        + D IF F+T +   L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  SQDDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

RVW27595.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]9.7e-1138.3Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        DD   FS      L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

RVW75343.1 LINE-1 reverse transcriptase-like [Vitis vinifera]9.7e-1138.3Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        DD   FS      L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.4e-1142.39Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQK
        DDI +F       + NL  ++H FE+ SG  I L KS+I  IN+     N +A  WG    +LP  YLGM LG KPS+  FW+ +++KIQ+K
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQK

XP_028118943.1 uncharacterized protein LOC114316485 [Camellia sinensis]7.4e-1131.45Show/hide
Query:  YGSKWVTKFGKAMVKMGSIDVLTGSQ------DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYL
        +G+KW+  + K  V    + VL          DD  LFS  ++ +++ L +++  FE +SG KI   KS I G+ +S   +N +AT+  C   +LP+ YL
Subjt:  YGSKWVTKFGKAMVKMGSIDVLTGSQ------DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYL

Query:  GMSLGRKPSNHVFWEQIVEKIQQK
        G+  G  P     W+ +V+K++ K
Subjt:  GMSLGRKPSNHVFWEQIVEKIQQK

TrEMBL top hitse value%identityAlignment
A0A438CEZ3 LINE-1 retrotransposable element ORF2 protein4.7e-1138.3Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        DD   FS      L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

A0A438CHS8 Transposon TX1 uncharacterized 149 kDa protein2.7e-1138.54Show/hide
Query:  SQDDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        + D IF F+T +   L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  SQDDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

A0A438CWL6 Transposon TX1 uncharacterized 149 kDa protein4.7e-1138.3Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        DD   FS      L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

A0A438KQT0 Transposon TX1 uncharacterized 149 kDa protein4.7e-1138.3Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD
        DD   FS      L+ L  L+ +F ++SG K+ L KS+I GIN+ HA+++ +A   GC     PI+YLG+ LG  P    FW+ ++E+I ++ D
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQKFD

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein3.6e-1142.39Show/hide
Query:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQK
        DDI +F       + NL  ++H FE+ SG  I L KS+I  IN+     N +A  WG    +LP  YLGM LG KPS+  FW+ +++KIQ+K
Subjt:  DDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHVFWEQIVEKIQQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATGTATATATGGCTCTAAATGGGTTACTAAGTTCGGGAAGGCGATGGTTAAAATGGGCTCCATTGATGTCCTCACGGGATCACAAGATGACATTTTTCTTTTCTC
TACTTTTGATATCTACAAGTTGAAGAACCTTCTCCAACTGATTCATTCATTTGAAAATGTTTCGGGGTTCAAGATAAAACTTCAAAAATCTTCGATAGCTGGTATAAACA
TCTCCCATGCAAACCTAAACCATGTTGCAACGCTATGGGGTTGCCCGTGGGTTAATCTTCCTATCATATACTTAGGTATGTCGTTGGGTAGGAAGCCATCCAATCATGTT
TTTTGGGAGCAAATTGTGGAAAAGATACAACAGAAATTTGACAAATGA
mRNA sequenceShow/hide mRNA sequence
CTGATACCAATTGTTAAGGACAACGAACCTACACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATCAACCCTCATGGTTTTGCTTTTGATTCCTCCAAAAAG
CCTCATACCAATGGAGATAATTGTCCTCACTTATATACCCACGATCAATCTCTTCCCTAGCCAATGTGGGATATTTGTTTGAATCCTAACATATATATATTGAGTTGAAG
AACCACCGTGGACTGTTGAGCTCCGATCAGACATTGTTGAGCAGCTCTTCCACCTAAAAAATGGTGTTGAATAATGCCATGTATATATGGCTCTAAATGGGTTACTAAGT
TCGGGAAGGCGATGGTTAAAATGGGCTCCATTGATGTCCTCACGGGATCACAAGATGACATTTTTCTTTTCTCTACTTTTGATATCTACAAGTTGAAGAACCTTCTCCAA
CTGATTCATTCATTTGAAAATGTTTCGGGGTTCAAGATAAAACTTCAAAAATCTTCGATAGCTGGTATAAACATCTCCCATGCAAACCTAAACCATGTTGCAACGCTATG
GGGTTGCCCGTGGGTTAATCTTCCTATCATATACTTAGGTATGTCGTTGGGTAGGAAGCCATCCAATCATGTTTTTTGGGAGCAAATTGTGGAAAAGATACAACAGAAAT
TTGACAAATGA
Protein sequenceShow/hide protein sequence
MPCIYGSKWVTKFGKAMVKMGSIDVLTGSQDDIFLFSTFDIYKLKNLLQLIHSFENVSGFKIKLQKSSIAGINISHANLNHVATLWGCPWVNLPIIYLGMSLGRKPSNHV
FWEQIVEKIQQKFDK