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Tan0013805 (gene) of Snake gourd v1 genome

Gene IDTan0013805
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:23097085..23097841
RNA-Seq ExpressionTan0013805
SyntenyTan0013805
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381032.1 uncharacterized protein LOC107174551 [Citrus sinensis]1.2e-1336.5Show/hide
Query:  QDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLT
        Q  W PPPN + K+N DA+   + ++ GL  +VRDS G+      KS+    ++ M E+TA+  G+Q   K N      + E+DS+EV +L+ + S  LT
Subjt:  QDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLT

Query:  EVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        E+  LI +I++  +NF+      CPR+ N  AH LA+
Subjt:  EVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.7e-1839.55Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN
        W PP +  WKLN++A+W+AD   GG+ WI+RD +G  I    + I    NI  LE  AI EG++ +    + C  + +E+DS+E  +LL R  +D TE+ 
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN

Query:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
         L++EI Q+ K+ + ++     R  NKVAH LAR
Subjt:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.5e-1937.84Show/hide
Query:  TVNLLTESHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVY
        ++++L ++  ++  W PPP   W LN+DASW      GG+ WI+R   G  +  G++ ++   N+K+LE++AI+EG++NL  L      L IETDS EV 
Subjt:  TVNLLTESHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVY

Query:  NLLVRDSEDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        +LL R  EDLT+   +++EI  L  + + + F+K  R  N  AH LA+
Subjt:  NLLVRDSEDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.6e-1838.57Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIK------LNQACENLVIETDSIEVYNLLVRDSE
        W PP +  WKLN+DA+W+AD   GG+ WI+RD +G  I    + I    NI  LE  AI EG++ + +        + C  + +E+DS+E  +LL R  +
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIK------LNQACENLVIETDSIEVYNLLVRDSE

Query:  DLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        D TE+  L++EI Q+ ++ K ++     R  NKVAH LAR
Subjt:  DLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

XP_024041966.1 uncharacterized protein LOC112099096 [Citrus clementina]1.2e-1336.5Show/hide
Query:  QDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLT
        Q  W PPPN + K+N DA+   + ++ GL  +VRDS G+      KS+    ++ M E+TA+  G+Q   K N      + E+DS+EV +L+ + S  LT
Subjt:  QDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLT

Query:  EVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        E+  LI +I++  +NF+      CPR+ N  AH LA+
Subjt:  EVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112371.4e-1233.58Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN
        W+PP    +K+N+DAS+ A  +  GL  I+R+ RG  +    K ++  +++ M E+   VEG+Q   K+      +++ETDS  ++NL  + SEDL+E  
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN

Query:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
         ++ + K         +F+   R GNK AH LAR
Subjt:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

A0A6J1CP26 uncharacterized protein LOC1110134121.3e-1839.55Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN
        W PP +  WKLN++A+W+AD   GG+ WI+RD +G  I    + I    NI  LE  AI EG++ +    + C  + +E+DS+E  +LL R  +D TE+ 
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN

Query:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
         L++EI Q+ K+ + ++     R  NKVAH LAR
Subjt:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

A0A6J1DNV9 uncharacterized protein LOC1110224032.7e-1937.84Show/hide
Query:  TVNLLTESHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVY
        ++++L ++  ++  W PPP   W LN+DASW      GG+ WI+R   G  +  G++ ++   N+K+LE++AI+EG++NL  L      L IETDS EV 
Subjt:  TVNLLTESHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVY

Query:  NLLVRDSEDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        +LL R  EDLT+   +++EI  L  + + + F+K  R  N  AH LA+
Subjt:  NLLVRDSEDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

A0A6J1DSV1 uncharacterized protein LOC1110236082.3e-1838.57Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIK------LNQACENLVIETDSIEVYNLLVRDSE
        W PP +  WKLN+DA+W+AD   GG+ WI+RD +G  I    + I    NI  LE  AI EG++ + +        + C  + +E+DS+E  +LL R  +
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIK------LNQACENLVIETDSIEVYNLLVRDSE

Query:  DLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        D TE+  L++EI Q+ ++ K ++     R  NKVAH LAR
Subjt:  DLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

A0A7N2MU32 Uncharacterized protein2.4e-1231.91Show/hide
Query:  SHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDS
        +H +Q  W PPP    K+N D +  + +K  G+  +VRD  G  +    K I  ++++K +E  A+          +   + L++E DS+EV   L+  +
Subjt:  SHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDS

Query:  EDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        E LT   LL+++++ LS+NF  + +S   R+GN VAH LA+
Subjt:  EDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0729.85Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN
        W  PP+T  K N DA +          WI+R+  G     G   +D        E+ A++  +Q      +    +++E D   + NL+   S      N
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVN

Query:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        LL D+I+  +K F  + FS   R GNKVAH LA+
Subjt:  LLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

AT3G09510.1 Ribonuclease H-like superfamily protein8.8e-0726.95Show/hide
Query:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNL-------IKLNQACENLVIETDSIEVYNLLVRDS
        W  PP T+ K N DA +   K      WI+R+  G+PI  G   +    N    E+ A++  +Q         + +   C+ L+   + I  ++ L    
Subjt:  WIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNL-------IKLNQACENLVIETDSIEVYNLLVRDS

Query:  EDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        ED          I   +  F  I F    R GNK+AH LA+
Subjt:  EDLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0730.15Show/hide
Query:  DSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTE
        D W  P   + K N D S  A ++  GL WI+R+S+G+ +  G       + IK  E TA++  +Q    L      +  E D+I V N L+R+ E    
Subjt:  DSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTE

Query:  VNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR
        +   ++ I+Q SK F  + F+   R  N     LA+
Subjt:  VNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLAR

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0427.42Show/hide
Query:  SDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIK-MLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVNLLIDEIKQLSK
        +DA+WK + K  G  W++R+       + ++S  +N  +  M E+ A+   +Q    +      L + +DS ++   +  +S   TE   +I +I  LS 
Subjt:  SDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIK-MLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSEDLTEVNLLIDEIKQLSK

Query:  NFKEITFSKCPRNGNKVAHHLARA
         F +++FS  PR+ N+VA  LA++
Subjt:  NFKEITFSKCPRNGNKVAHHLARA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTGTAAACCTATTAACGGAGAGCCACGCGAGTCAAGATTCTTGGATTCCTCCACCAAACACCTTCTGGAAGCTTAATTCTGACGCTTCTTGGAAGGCTGATAA
GAAAATTGGAGGCCTCGACTGGATAGTTCGTGACTCCAGAGGATCTCCGATCTGTGTCGGTCACAAATCAATTGACAAAAACGAAAACATTAAAATGTTAGAATCAACAG
CTATCGTTGAAGGCATGCAAAATCTCATTAAACTGAACCAAGCTTGTGAGAATTTGGTCATTGAAACTGATTCAATTGAAGTTTACAACCTTCTGGTTAGGGATAGCGAG
GACCTTACAGAGGTTAACCTCCTCATTGATGAAATTAAACAGTTGAGCAAGAATTTTAAGGAGATTACCTTCTCTAAGTGTCCCAGGAATGGCAACAAGGTAGCCCATCA
TCTTGCTCGTGCGAGAAGGCCTGGAGGGGAGTCTCCTTCTTCTTCATCGATGTGCTTCTGTTTTGGGGATTTTCGTTTTTTCGATTCTGCATGTTCGAATGTTTTGGAGG
AACGTTTTGTTCCCTTTTGGATCTCCTCTGCTTTAAATGAGGAAGTGGGTGTAACTTCTTTGGTTAGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTGTAAACCTATTAACGGAGAGCCACGCGAGTCAAGATTCTTGGATTCCTCCACCAAACACCTTCTGGAAGCTTAATTCTGACGCTTCTTGGAAGGCTGATAA
GAAAATTGGAGGCCTCGACTGGATAGTTCGTGACTCCAGAGGATCTCCGATCTGTGTCGGTCACAAATCAATTGACAAAAACGAAAACATTAAAATGTTAGAATCAACAG
CTATCGTTGAAGGCATGCAAAATCTCATTAAACTGAACCAAGCTTGTGAGAATTTGGTCATTGAAACTGATTCAATTGAAGTTTACAACCTTCTGGTTAGGGATAGCGAG
GACCTTACAGAGGTTAACCTCCTCATTGATGAAATTAAACAGTTGAGCAAGAATTTTAAGGAGATTACCTTCTCTAAGTGTCCCAGGAATGGCAACAAGGTAGCCCATCA
TCTTGCTCGTGCGAGAAGGCCTGGAGGGGAGTCTCCTTCTTCTTCATCGATGTGCTTCTGTTTTGGGGATTTTCGTTTTTTCGATTCTGCATGTTCGAATGTTTTGGAGG
AACGTTTTGTTCCCTTTTGGATCTCCTCTGCTTTAAATGAGGAAGTGGGTGTAACTTCTTTGGTTAGTTTTTAA
Protein sequenceShow/hide protein sequence
MATVNLLTESHASQDSWIPPPNTFWKLNSDASWKADKKIGGLDWIVRDSRGSPICVGHKSIDKNENIKMLESTAIVEGMQNLIKLNQACENLVIETDSIEVYNLLVRDSE
DLTEVNLLIDEIKQLSKNFKEITFSKCPRNGNKVAHHLARARRPGGESPSSSSMCFCFGDFRFFDSACSNVLEERFVPFWISSALNEEVGVTSLVSF