CuGenDBv2

Gene ID	Tan0013828
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L23
Genome location	LG01:13972937..13973762
RNA-Seq Expression	Tan0013828
Synteny	Tan0013828
Gene Ontology terms	GO:0010584 - pollen exine formation (biological process) GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process) GO:0032543 - mitochondrial translation (biological process) GO:1902183 - regulation of shoot apical meristem development (biological process) GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process) GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process) GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR013025 - Ribosomal protein L25/L23 IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

6.3e-85

94.25

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR

XP_022929525.1 uncharacterized protein LOC111436066 [Cucurbita moschata]

6.3e-85

93.64

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G KAYKGF++R RRR G  E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

XP_022943267.1 uncharacterized protein LOC111448049 [Cucurbita moschata]

1.5e-86

96.53

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]

1.4e-87

97.11

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

XP_038905477.1 uncharacterized protein LOC120091488 [Benincasa hispida]

4.4e-86

95.95

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDK+NMNKQSKSSIVEEGEAKRHWLHEKEP+GLK YKGFADRGRR IGG E VE STKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C191 uncharacterized protein LOC103495731 isoform X1

3.0e-85

94.25

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait

3.0e-85

94.25

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G+K YKGFADRGRRRI GG E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRI-GGVEAVEPSTKFPWSSMRSGR

A0A6J1EUM4 uncharacterized protein LOC111436066

3.0e-85

93.64

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G KAYKGF++R RRR G  E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

A0A6J1FSK6 uncharacterized protein LOC111448049

7.2e-87

96.53

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE +GLK YKGFADRGRRRIGG EAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

A0A6J1JA70 uncharacterized protein LOC111483116

4.0e-85

94.22

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEP+G KAYKGF+DR RRR G  E VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

SwissProt top hits

e value

%identity

Alignment

A0KF23 50S ribosomal protein L23

1.6e-06

45.76

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Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L23

2.1e-06

45.76

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Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L23

2.1e-06

45.76

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L23

1.2e-06

42.47

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Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L23

9.3e-07

41.67

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G39880.1 Ribosomal protein L23/L15e family protein

4.7e-54

65.71

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNM+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAY-KGFADRGRRRIG----GVEAVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   +  Y KG   RG  R      G  A   + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPMGLKAY-KGFADRGRRRIG----GVEAVEPSTKFPWSSMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAGCAGGCTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
CTCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGGTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGAGGGC
TTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGAGAGGCCAAGAGGCATTGGCTACATGAAAAGGAGCCAATGGGATTGAAAGCTTACAAGGGTTTTGCGGATAG
AGGCCGCCGACGAATTGGCGGCGTTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

Show/hide mRNA sequence

GCGTCTTGCAGGGTTCGGTTTCATTCCTTCCCCGCCTGCTGTTCATAGACGCTTTTGGGAGGAACAAAGAAAGCCAAGAACATGGGAAGCAGGCTCGGAAGAAGAGTTGT
TCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCG
TTCTCGAGAGCCTCTACGGGTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAG
GCTTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGT
TGAGGAGGGAGAGGCCAAGAGGCATTGGCTACATGAAAAGGAGCCAATGGGATTGAAAGCTTACAAGGGTTTTGCGGATAGAGGCCGCCGACGAATTGGCGGCGTTGAAG
CTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTTTGAAGAATGCATCCCTGTTTATTGTGATCTGTTTTGGATTTTTTGTTTCTTCTAA
ACGATGATAGTGTAATAGGTTGATGACTGCTTTGAGCTTAATGATAAATTGTTTGTTTTTCTAGTTGTGAAATGAACTCTTGTTGTCCCTTTTATGGGGCGTTTTGCTGG
AGGAAGTTCTGTTTTCTGCTTAAATCAATAAAGAAATTAGAGTTGTATTTGTATTA

Protein sequence

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MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEPMGLKAYKGFADRGRRRIGGVEAVEPSTKFPWSSMRSGR

Tan0013828 (gene) of Snake gourd v1 genome