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Tan0013854 (gene) of Snake gourd v1 genome

Gene IDTan0013854
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:26001048..26002832
RNA-Seq ExpressionTan0013854
SyntenyTan0013854
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-0545.45Show/hide
Query:  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV-------------------------NDVCWLYAIFRAKLAGSSRGSVTCY
        LVEIEL VPDILP SAESS+S    TW+ LY + V+V                          +DVCWL+AIFRAK AG   G VT +
Subjt:  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV-------------------------NDVCWLYAIFRAKLAGSSRGSVTCY

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.4e-0540.38Show/hide
Query:  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAGSS
        ++LPRGNR ++    L   VEIEL VPD LP SAESS+S    TW+ LY + V+V                           +D+CWL+A+F AK AGS 
Subjt:  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAGSS

Query:  RGSV
         G V
Subjt:  RGSV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0748.24Show/hide
Query:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV
        + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V           +DVCWL+A+FRAK AG   G V
Subjt:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]8.2e-0637.8Show/hide
Query:  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV----------------------
        S  ENL +PRGNRSS++  +L                    VEIEL VPD LP SAES  S    TW+ LY +FV+V                       
Subjt:  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV----------------------

Query:  ----NDVCWLYAIFRAKLAGSSRGSVT
            +DVCWL+ +FRAK+AG   G VT
Subjt:  ----NDVCWLYAIFRAKLAGSSRGSVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0748.24Show/hide
Query:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV
        + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V           +DVCWL+A+FRAK AG   G V
Subjt:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein6.8e-0640.38Show/hide
Query:  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAGSS
        ++LPRGNR ++    L   VEIEL VPD LP SAESS+S    TW+ LY + V+V                           +D+CWL+A+F AK AGS 
Subjt:  NLLPRGNRSSIRARDL---VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV--------------------------NDVCWLYAIFRAKLAGSS

Query:  RGSV
         G V
Subjt:  RGSV

A0A5A7VIY9 Uncharacterized protein4.0e-0637.8Show/hide
Query:  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV----------------------
        S  ENL +PRGNRSS++  +L                    VEIEL VPD LP SAES  S    TW+ LY +FV+V                       
Subjt:  SREENL-LPRGNRSSIRARDL--------------------VEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV----------------------

Query:  ----NDVCWLYAIFRAKLAGSSRGSVT
            +DVCWL+ +FRAK+AG   G VT
Subjt:  ----NDVCWLYAIFRAKLAGSSRGSVT

A0A5A7VMG9 Reverse transcriptase1.6e-0748.24Show/hide
Query:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV
        + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V           +DVCWL+A+FRAK AG   G V
Subjt:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV

A0A5D3BTP3 Reverse transcriptase1.5e-0545.45Show/hide
Query:  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV-------------------------NDVCWLYAIFRAKLAGSSRGSVTCY
        LVEIEL VPDILP SAESS+S    TW+ LY + V+V                          +DVCWL+AIFRAK AG   G VT +
Subjt:  LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVV-------------------------NDVCWLYAIFRAKLAGSSRGSVTCY

A0A5D3DX39 Reverse transcriptase1.6e-0748.24Show/hide
Query:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV
        + P    S +R  D +VEIEL VPD LP SAESS+S    TW+ LY +FV+V           +DVCWL+A+FRAK AG   G V
Subjt:  LLPRGNRSSIRARD-LVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYV----------VNDVCWLYAIFRAKLAGSSRGSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTCGAGCAAAATCCGACTTTGAGTTAATGATTTATGAAGAGGAAAGCAGAGAAGAGAATTTGCTGCCAAGAGGAAATAGGTCAAGTATACGAGCCCGGGA
TCTAGTAGAGATCGAGCTCCTGGTGCCTGACATCCTGCCATTGTCTGCCGAAAGCTCTCAGAGTTTGATATTTTGTACGTGGGTGGGGTTGTATAACAAGTTCGTATATG
TTGTAAACGATGTCTGTTGGCTTTATGCTATCTTTCGAGCTAAGTTAGCAGGTAGTTCGAGAGGGAGTGTGACATGTTATAAAACAATTTATAACACAAAAACTCTCTCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTCGAGCAAAATCCGACTTTGAGTTAATGATTTATGAAGAGGAAAGCAGAGAAGAGAATTTGCTGCCAAGAGGAAATAGGTCAAGTATACGAGCCCGGGA
TCTAGTAGAGATCGAGCTCCTGGTGCCTGACATCCTGCCATTGTCTGCCGAAAGCTCTCAGAGTTTGATATTTTGTACGTGGGTGGGGTTGTATAACAAGTTCGTATATG
TTGTAAACGATGTCTGTTGGCTTTATGCTATCTTTCGAGCTAAGTTAGCAGGTAGTTCGAGAGGGAGTGTGACATGTTATAAAACAATTTATAACACAAAAACTCTCTCT
TGA
Protein sequenceShow/hide protein sequence
MKEARAKSDFELMIYEEESREENLLPRGNRSSIRARDLVEIELLVPDILPLSAESSQSLIFCTWVGLYNKFVYVVNDVCWLYAIFRAKLAGSSRGSVTCYKTIYNTKTLS