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Tan0013881 (gene) of Snake gourd v1 genome

Gene IDTan0013881
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionElf4 domain-containing protein
Genome locationLG08:14898506..14898807
RNA-Seq ExpressionTan0013881
SyntenyTan0013881
Gene Ontology termsGO:0042753 - positive regulation of circadian rhythm (biological process)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8534789.1 hypothetical protein F0562_029769 [Nyssa sinensis]2.6e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G+TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLS+SFTKSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

XP_006381644.1 protein ELF4-LIKE 3 [Populus trichocarpa]3.3e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLSTSFTKSM+ASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

XP_021606568.1 protein ELF4-LIKE 3-like [Manihot esculenta]4.4e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLS+SFTKSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

XP_041009190.1 protein ELF4-LIKE 4-like [Juglans microcarpa x Juglans regia]3.3e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++ K+LHTFQKNFV                             +NV LIR+ N+N RRV DLY DLSTSFTKS+EASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           +R D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

XP_042974995.1 protein ELF4-LIKE 4-like [Carya illinoinensis]1.5e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+LHTFQKNFV                             +NV LI++ N+N RRV DLY DLSTSFTKS+EASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           +R D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

TrEMBL top hitse value%identityAlignment
A0A2C9W4E0 Elf4 domain-containing protein2.1e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLS+SFTKSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

A0A4U5QTY9 Elf4 domain-containing protein1.6e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLSTSFTKSM+ASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

A0A5J5AWH1 Elf4 domain-containing protein1.2e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G+TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLS+SFTKSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

A0A6M2ESE4 Elf4 domain-containing protein1.6e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLSTSFTKSM+ASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

B9MSX7 Elf4 domain-containing protein1.6e-1346.15Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G TFS       NG+Q++GK+L TFQKNFV                             +NV LIR+ NNN RRV DLY DLSTSFTKSM+ASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
           ++ D K GHKRNRP
Subjt:  VAPIRPDDKRGHKRNRP

SwissProt top hitse value%identityAlignment
Q570U6 Protein ELF4-LIKE 41.6e-0534.69Show/hide
Query:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR
        ++GK+L +FQK+FV                             +NV LI++ NNN RRV  LY DLS SF +S++ASS+      ++ D K   KR R
Subjt:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR

Q8S8F5 Protein ELF4-LIKE 31.1e-0638.46Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G T  SR M   +G Q++GK+L TF+K+FV                             +NV LIR+ NNN RRV  LY DLS +F+KSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
               + RG++R RP
Subjt:  VAPIRPDDKRGHKRNRP

Q94BS8 Protein ELF4-LIKE 24.5e-0532.99Show/hide
Query:  QVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKR
        Q++GK+L  FQK+FV                             +NV LIR+ NNN R V  LY DLS SF +S++ASS+      ++ D K  +++
Subjt:  QVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKR

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 41.1e-0634.69Show/hide
Query:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR
        ++GK+L +FQK+FV                             +NV LI++ NNN RRV  LY DLS SF +S++ASS+      ++ D K   KR R
Subjt:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR

AT1G17455.2 ELF4-like 41.1e-0634.69Show/hide
Query:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR
        ++GK+L +FQK+FV                             +NV LI++ NNN RRV  LY DLS SF +S++ASS+      ++ D K   KR R
Subjt:  VNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNR

AT1G72630.1 ELF4-like 23.2e-0632.99Show/hide
Query:  QVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKR
        Q++GK+L  FQK+FV                             +NV LIR+ NNN R V  LY DLS SF +S++ASS+      ++ D K  +++
Subjt:  QVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKR

AT2G06255.1 ELF4-like 37.7e-0838.46Show/hide
Query:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF
        M+G T  SR M   +G Q++GK+L TF+K+FV                             +NV LIR+ NNN RRV  LY DLS +F+KSMEASS+ + 
Subjt:  MKGKTFSSRAMENENGSQVNGKMLHTFQKNFV-----------------------------KNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNF

Query:  VAPIRPDDKRGHKRNRP
               + RG++R RP
Subjt:  VAPIRPDDKRGHKRNRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAAAGACATTCTCATCAAGAGCAATGGAAAATGAAAATGGAAGCCAAGTTAATGGGAAAATGCTACATACATTTCAGAAGAATTTTGTCAAAAACGTGAGTTT
GATTCGCAAGCCTAACAACAACACTAGAAGGGTTTTTGATTTGTATGACGATCTCTCCACCTCTTTCACCAAATCCATGGAGGCTTCGTCAAAAAGAAATTTTGTCGCCC
CCATCAGACCTGACGACAAGCGTGGGCACAAGCGCAACCGCCCTCCGCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAAAGACATTCTCATCAAGAGCAATGGAAAATGAAAATGGAAGCCAAGTTAATGGGAAAATGCTACATACATTTCAGAAGAATTTTGTCAAAAACGTGAGTTT
GATTCGCAAGCCTAACAACAACACTAGAAGGGTTTTTGATTTGTATGACGATCTCTCCACCTCTTTCACCAAATCCATGGAGGCTTCGTCAAAAAGAAATTTTGTCGCCC
CCATCAGACCTGACGACAAGCGTGGGCACAAGCGCAACCGCCCTCCGCCGTAA
Protein sequenceShow/hide protein sequence
MKGKTFSSRAMENENGSQVNGKMLHTFQKNFVKNVSLIRKPNNNTRRVFDLYDDLSTSFTKSMEASSKRNFVAPIRPDDKRGHKRNRPPP