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Tan0013889 (gene) of Snake gourd v1 genome

Gene IDTan0013889
OrganismTrichosanthes anguina (Snake gourd v1)
Description39S ribosomal protein L41-A, mitochondrial
Genome locationLG06:2910035..2913144
RNA-Seq ExpressionTan0013889
SyntenyTan0013889
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR019189 - Ribosomal protein L27/L41, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135839.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus]2.3e-4193.55Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+KTS  +ESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

XP_008461075.1 PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]8.7e-4192.47Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+ TS  +ESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

XP_022143129.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia]3.5e-4295.7Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLTDFKLKPYVSQCP EVKTS  SESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

XP_022982189.1 39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima]1.9e-4092.47Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIE KTS   ES KS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

XP_038897038.1 39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]1.2e-4296.77Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTS  +ESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

TrEMBL top hitse value%identityAlignment
A0A0A0KBX4 Uncharacterized protein1.1e-4193.55Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+KTS  +ESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

A0A1S3CEC5 39S ribosomal protein L41-A, mitochondrial-like4.2e-4192.47Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+DFKLKPYVSQCPIE+ TS  +ESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

A0A2C9U139 Uncharacterized protein2.7e-4091.3Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK
        M LGLILG+GRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPNYVVPDLTDFKLKPYVSQCP EVKT+  SE+AK
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK

A0A6J1CNE9 39S ribosomal protein L41-A, mitochondrial1.7e-4295.7Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLTDFKLKPYVSQCP EVKTS  SESAKS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

A0A6J1J3V5 39S ribosomal protein L41-A, mitochondrial-like9.4e-4192.47Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS
        MALGLILGL R+MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIE KTS   ES KS
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS

SwissProt top hitse value%identityAlignment
Q5BJX1 39S ribosomal protein L41, mitochondrial4.5e-0851.92Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q6DJI4 39S ribosomal protein L41-A, mitochondrial1.6e-0844.59Show/hide
Query:  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +GLI  + R + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q6INF3 39S ribosomal protein L41-B, mitochondrial2.7e-0844.59Show/hide
Query:  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q8IXM3 39S ribosomal protein L41, mitochondrial6.5e-0751.85Show/hide
Query:  SSKRAPRDY--YKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +SKR PR +   KG+  K  GF T    +V + E +P +VVPDLT FKLKPYVS
Subjt:  SSKRAPRDY--YKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Q9CQN7 39S ribosomal protein L41, mitochondrial4.5e-0850Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS
        +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVS

Arabidopsis top hitse value%identityAlignment
AT4G09012.1 Mitochondrial ribosomal protein L272.2e-3475.27Show/hide
Query:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEV-KTSGGSESAK
        M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPNYVVPDLT FKLKPYVSQCP++V KT+  +E++K
Subjt:  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEV-KTSGGSESAK

AT5G39800.1 Mitochondrial ribosomal protein L277.4e-3878.65Show/hide
Query:  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK
        GL++G+GR+ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCPI+V T+  +E++K
Subjt:  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK

AT5G40080.1 Mitochondrial ribosomal protein L271.6e-3777.53Show/hide
Query:  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK
        GL++G+GR+ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCP++V T+  +E++K
Subjt:  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGGGGCTGATATTGGGACTCGGAAGAGCAATGCGAAGGAAACGTACATCTTCTCTGGACATTCTCTCTTCCAAACGAGCTCCAAGAGATTATTACAAGGGCAA
GAATTGCAAGCCTACTGGGTTTCATACGCGCAAAGGTGGATACGTAGTTGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTGATTTCAAGCTCAAGCCTT
ATGTGTCTCAATGTCCAATAGAAGTTAAGACAAGTGGCGGCAGCGAATCAGCTAAATCATAA
mRNA sequenceShow/hide mRNA sequence
GATATTTTGAATATGTTAAGGCCTAAGGGATTGATGGACACCAATTAAACTAGTTTAGAAACTAAATTTGTAATTAAAAACAAAAAGTTGTGAATAAAAAACCAATCTCT
TTCCTCTCTCTTGTTTCCTCTTTCCTTTTTCCTTCTCGTAGCAGCCGTCATTGCTGTCCTTCTTCCCCTCCCTCACGATCTCGTCTGCTCCACCACCTCAGTGACGAAAC
AGCGCATCCTCTCCGACGGCGCTTAAACCGCTGAAGGAACAGCAACACTCAGCGAAGACCCACGGACCCGTCTGATAACCTAGCCGAGATTTCAGGGTTCTGGTTTTTTT
TCTTTTGTCTTCGAATTCTTGATATTGGGGCGGGGAAATGGCGTTGGGGCTGATATTGGGACTCGGAAGAGCAATGCGAAGGAAACGTACATCTTCTCTGGACATTCTCT
CTTCCAAACGAGCTCCAAGAGATTATTACAAGGGCAAGAATTGCAAGCCTACTGGGTTTCATACGCGCAAAGGTGGATACGTAGTTGTGCCAGAGAAACTGCCTAACTAT
GTCGTCCCTGATTTGACTGATTTCAAGCTCAAGCCTTATGTGTCTCAATGTCCAATAGAAGTTAAGACAAGTGGCGGCAGCGAATCAGCTAAATCATAAGCGAAGAGGCG
ATAGGATTCGAATCAAGGGGGGTAAAATTAAAGGTTTCATACACTGGAGGTGATTGAGGGAAATTATGTATAAATCCTCTGCCCTATATGAATGGAAGAATCCTTCCATT
TTTGCTTCATTTTGATTTTTTCTTCTAAAATACATTTTTTCTTTTTTCTTTAGTTATAGAGGAAGCTAAACCTCTGACTTTTTAGTTAAGAATATAATATCGTAATCAAT
TGAGTTGTATTCAAATTCGCTCTGGTAAAATATAGTTAAGAGAAGACAATATTGCCATGTAGGGAAATGCATCTAAGGTTGATGAGCCAAAT
Protein sequenceShow/hide protein sequence
MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPIEVKTSGGSESAKS