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Tan0013938 (gene) of Snake gourd v1 genome

Gene IDTan0013938
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationLG08:1057278..1057711
RNA-Seq ExpressionTan0013938
SyntenyTan0013938
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4985.83Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPL
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVP-STLIRR
        CRCL++GQPPE P STLIRR
Subjt:  CRCLVAGQPPEVP-STLIRR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4985.83Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPL
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVP-STLIRR
        CRCL++GQPPE P STLIRR
Subjt:  CRCLVAGQPPEVP-STLIRR

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]5.9e-5086.67Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPL
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVP-STLIRR
        CRCL+AGQPPE P STLIRR
Subjt:  CRCLVAGQPPEVP-STLIRR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]5.9e-5086.67Show/hide
Query:  MAAGAVMAEATRNLA-ANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA +V AE TRNLA A PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPL
Subjt:  MAAGAVMAEATRNLA-ANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVP-STLIRR
        CRCL+AGQPPE P STLIRR
Subjt:  CRCLVAGQPPEVP-STLIRR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]3.5e-4783.19Show/hide
Query:  MAAGAVMAEATRNLAAN-PIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA AVM E TRNL A  PIEFLFDLDMVLSGADDFGCCQIS   +DSLVADLP V+ADVCAVCLEDF PDE GKQIPCGHVYHESCISSWL V DCCPL
Subjt:  MAAGAVMAEATRNLAAN-PIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVPSTLIRR
        CRC VAGQPP+  STLIRR
Subjt:  CRCLVAGQPPEVPSTLIRR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein1.4e-4478.99Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA AVM E T NL +  PIEFLFDLD VLSGADD GCCQI+ SDS   VAD PTV+ADVCAVCL+DF PDE GKQIPCGHVYHESCISSWL V DCCPL
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVPSTLIRR
        CRCLVAGQPP+  STLIRR
Subjt:  CRCLVAGQPPEVPSTLIRR

A0A1S4DZX3 RING-H2 finger protein ATL5-like2.8e-4277.5Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP
        MAA AVM E T  L +  PIEFLFDLD VLSGADD  C CQI+ SDS   VAD PTV+ADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCP
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP

Query:  LCRCLVAGQPPEVPSTLIRR
        LCRCLVAGQPP+  STLIRR
Subjt:  LCRCLVAGQPPEVPSTLIRR

A0A5A7V2P4 RING-H2 finger protein ATL5-like2.8e-4277.5Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP
        MAA AVM E T  L +  PIEFLFDLD VLSGADD  C CQI+ SDS   VAD PTV+ADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCP
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGC-CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP

Query:  LCRCLVAGQPPEVPSTLIRR
        LCRCLVAGQPP+  STLIRR
Subjt:  LCRCLVAGQPPEVPSTLIRR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like1.8e-4175.42Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSD-SDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP
        MAA AV+AE TRNL AA P+E LFDLDMVLSG DDFGCC ++ ++ SDS+VADLPTV+ADVCAVC EDFR DEGGKQIPCGHVYHE CISSWLAV DCCP
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSD-SDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP

Query:  LCRCLVAGQPPEVPSTLI
        LCR  V  +PP  PST I
Subjt:  LCRCLVAGQPPEVPSTLI

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like2.8e-5086.67Show/hide
Query:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL
        MAA +V AE TRNL AA PIEFLFDLDMVLSGADDFGCCQIS   SDSLVADLPTV+ADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPL
Subjt:  MAAGAVMAEATRNL-AANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPL

Query:  CRCLVAGQPPEVP-STLIRR
        CRCL+AGQPPE P STLIRR
Subjt:  CRCLVAGQPPEVP-STLIRR

SwissProt top hitse value%identityAlignment
Q6IRP0 E3 ubiquitin-protein ligase RNF126-B2.6e-0845.83Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ
        C VC ED+   E  +Q+PC H++H  CI  WL   D CP+CR  ++GQ
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ

Q91YL2 E3 ubiquitin-protein ligase RNF1268.9e-0947.92Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ
        C VC ED+   E  +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ

Q9D0C1 E3 ubiquitin-protein ligase RNF1152.6e-0845.83Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ
        C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ

Q9VHI7 E3 ubiquitin-protein ligase Iruka1.2e-0847.62Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Q9Y4L5 E3 ubiquitin-protein ligase RNF1152.6e-0845.83Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ
        C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR  + G+
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQ

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein4.4e-1146.3Show/hide
Query:  LVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        ++ D   V   VCA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR
Subjt:  LVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

AT2G44330.1 RING/U-box superfamily protein2.4e-0950Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        CA+C EDF   E  +++PC H+YH  CI  WL   + CPLCR
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

AT3G02340.1 RING/U-box superfamily protein4.1e-0930.08Show/hide
Query:  EATRNLAANPIEFLFDLDMVLSGADDFGCCQISVSDSD---------------------SLVADLPTV-LA--------DVCAVCLEDFRPDEGGKQIPC
        E    +  NP +   D  + LSG D+F        D+D                     S++ DLP V LA        +VCAVC ++   +E  +++PC
Subjt:  EATRNLAANPIEFLFDLDMVLSGADDFGCCQISVSDSD---------------------SLVADLPTV-LA--------DVCAVCLEDFRPDEGGKQIPC

Query:  GHVYHESCISSWLAVGDCCPLCR
         H YH  CI  WL + + CP+CR
Subjt:  GHVYHESCISSWLAVGDCCPLCR

AT3G19950.1 RING/U-box superfamily protein4.1e-0934.67Show/hide
Query:  SDSLVADLPTVLA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPE
        S S +  LPTV           + CAVC+++F      KQ+PC HV+H+ C+  WL + + CP+CR  +    P+
Subjt:  SDSLVADLPTVLA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPE

AT3G60080.1 RING/U-box superfamily protein2.8e-1042.19Show/hide
Query:  CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        C    SD DS++         +CAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Subjt:  CQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGGTGCTGTGATGGCTGAGGCGACAAGAAACTTAGCGGCAAATCCAATCGAATTTCTGTTTGATCTGGACATGGTTTTGTCGGGAGCCGACGACTTCGGATG
CTGCCAGATCAGCGTTTCCGATTCCGATTCTCTGGTGGCGGATTTGCCGACGGTGCTCGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAA
AACAAATCCCCTGCGGCCACGTGTACCACGAGTCTTGTATTTCCTCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGTCTTGTCGCCGGCCAACCACCGGAA
GTTCCTTCCACTTTGATCCGACGGTAG
mRNA sequenceShow/hide mRNA sequence
CTCACAAGTAGAGAAGAGAACCCGCTATCTACTCCATCTCCCTAGTTCCTAAACCACTCTTTTTTTTTCTCTCTCTAATGGCTGCCGGTGCTGTGATGGCTGAGGCGACA
AGAAACTTAGCGGCAAATCCAATCGAATTTCTGTTTGATCTGGACATGGTTTTGTCGGGAGCCGACGACTTCGGATGCTGCCAGATCAGCGTTTCCGATTCCGATTCTCT
GGTGGCGGATTTGCCGACGGTGCTCGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGCCACGTGTACCACGAGT
CTTGTATTTCCTCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGTCTTGTCGCCGGCCAACCACCGGAAGTTCCTTCCACTTTGATCCGACGGTAG
Protein sequenceShow/hide protein sequence
MAAGAVMAEATRNLAANPIEFLFDLDMVLSGADDFGCCQISVSDSDSLVADLPTVLADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCLVAGQPPE
VPSTLIRR