; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013944 (gene) of Snake gourd v1 genome

Gene IDTan0013944
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
Genome locationLG09:4829335..4831624
RNA-Seq ExpressionTan0013944
SyntenyTan0013944
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]2.7e-4141.32Show/hide
Query:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE
        + +++K++V+ I TP+E+LF+ILL +GYVSVEYL P+   + Y+++L C FHAGAKGH+L++C+ FR  VQEL+D K+ TVA   Q +G     +V   E
Subjt:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE

Query:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR
        G  ++     +  K LTIF+ +K        KPITI +P PF+YKSSKAVPW YE KV++  +  +P L +DNIT V G T +G+CYTP+ L K      
Subjt:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR

Query:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
         E  + K  E++   +    K    LH     +   A V+++
Subjt:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.8e-4040.71Show/hide
Query:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVAQSRG
        H+  Q+     QG   +++K++V+ I TP+ +LF+ILL +GY+SVEYL P    + Y+++L C FH GAKGHSL++C+ FR +VQEL+D K+ T A S  
Subjt:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVAQSRG

Query:  FYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTP
            N V  I  L ++    ++  KPLTIF+R+K    +   KP  I +P PF+YKSSKAVPW YE KV++  +  +PSL +DNIT V G TR+G+CYTP
Subjt:  FYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTP

Query:  NPLEKEKRLARLENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
        + L K       E  + K  E++   +    K    LH  +  +   A V+++
Subjt:  NPLEKEKRLARLENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.5e-3938.33Show/hide
Query:  YSSQGSRPMMNQGFQPHKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRV
        +  +    + N     HK  Q+     QG   ++++++VS I TP++ LF+IL  +GY+S+E+L PD   E Y++NL C +HAGA+GH L++C  F+++V
Subjt:  YSSQGSRPMMNQGFQPHKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRV

Query:  QELMDMKVFTVAQSRGFYPDNEVGTIEGLS-SKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSI--NSETPSLLID
        QEL+D+K+ TV QS   + +  +  +E +S ++        KPLT+ +R+K  + +   +PITI +P PF+Y SSKAVPW YE KV++   +++ SL +D
Subjt:  QELMDMKVFTVAQSRGFYPDNEVGTIEGLS-SKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSI--NSETPSLLID

Query:  NITEVRGQTRSGKCYTPNPLEKEKRLARLENRELKHQEER
        NIT   G TR+G+CYTP  L K        N++ K  E++
Subjt:  NITEVRGQTRSGKCYTPNPLEKEKRLARLENRELKHQEER

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.7e-3543.64Show/hide
Query:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---Q
        H+  Q+     QG   +++K++V+ I TP E+LF+ILL +GYVSVEYL P+   +EY+++L C FHAGAKGHSL++C+ FR +VQEL+D K+ TVA   Q
Subjt:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---Q

Query:  SRGFYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEV-----RGQT
         +G     +V   EG S       +  K LTIF+ +K    +   KPITI +P PF+YKSSKAVPW Y+ KV++  +  +P L +DNITEV     + + 
Subjt:  SRGFYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEV-----RGQT

Query:  RSGKCYTPNPLEKEKRLARL
        +  K  T    E  K+L  L
Subjt:  RSGKCYTPNPLEKEKRLARL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.3e-4042.15Show/hide
Query:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE
        + +++K++V+ I TP+ +LF+ILL +GYVSVEYL P+   + Y+++L C FHAGAKGHSL++C+ FR +VQEL+D K+ TVA   Q +G     +V   E
Subjt:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE

Query:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR
        G S       +  K LTIF+ +K        KPITI +P PF+YKSSKAVPW Y+ KV++  +  +P L IDNIT V G TR+G+CYTP+ L K      
Subjt:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR

Query:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
         E  + K  E++   +    K    LH     +   A V+++
Subjt:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H1.3e-4141.32Show/hide
Query:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE
        + +++K++V+ I TP+E+LF+ILL +GYVSVEYL P+   + Y+++L C FHAGAKGH+L++C+ FR  VQEL+D K+ TVA   Q +G     +V   E
Subjt:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE

Query:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR
        G  ++     +  K LTIF+ +K        KPITI +P PF+YKSSKAVPW YE KV++  +  +P L +DNIT V G T +G+CYTP+ L K      
Subjt:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR

Query:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
         E  + K  E++   +    K    LH     +   A V+++
Subjt:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

A0A6J1D099 Ribonuclease H1.9e-4040.71Show/hide
Query:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVAQSRG
        H+  Q+     QG   +++K++V+ I TP+ +LF+ILL +GY+SVEYL P    + Y+++L C FH GAKGHSL++C+ FR +VQEL+D K+ T A S  
Subjt:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVAQSRG

Query:  FYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTP
            N V  I  L ++    ++  KPLTIF+R+K    +   KP  I +P PF+YKSSKAVPW YE KV++  +  +PSL +DNIT V G TR+G+CYTP
Subjt:  FYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTP

Query:  NPLEKEKRLARLENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
        + L K       E  + K  E++   +    K    LH  +  +   A V+++
Subjt:  NPLEKEKRLARLENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-3938.33Show/hide
Query:  YSSQGSRPMMNQGFQPHKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRV
        +  +    + N     HK  Q+     QG   ++++++VS I TP++ LF+IL  +GY+S+E+L PD   E Y++NL C +HAGA+GH L++C  F+++V
Subjt:  YSSQGSRPMMNQGFQPHKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRV

Query:  QELMDMKVFTVAQSRGFYPDNEVGTIEGLS-SKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSI--NSETPSLLID
        QEL+D+K+ TV QS   + +  +  +E +S ++        KPLT+ +R+K  + +   +PITI +P PF+Y SSKAVPW YE KV++   +++ SL +D
Subjt:  QELMDMKVFTVAQSRGFYPDNEVGTIEGLS-SKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSI--NSETPSLLID

Query:  NITEVRGQTRSGKCYTPNPLEKEKRLARLENRELKHQEER
        NIT   G TR+G+CYTP  L K        N++ K  E++
Subjt:  NITEVRGQTRSGKCYTPNPLEKEKRLARLENRELKHQEER

A0A6J1DZ90 Ribonuclease H8.1e-3643.64Show/hide
Query:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---Q
        H+  Q+     QG   +++K++V+ I TP E+LF+ILL +GYVSVEYL P+   +EY+++L C FHAGAKGHSL++C+ FR +VQEL+D K+ TVA   Q
Subjt:  HKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---Q

Query:  SRGFYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEV-----RGQT
         +G     +V   EG S       +  K LTIF+ +K    +   KPITI +P PF+YKSSKAVPW Y+ KV++  +  +P L +DNITEV     + + 
Subjt:  SRGFYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEV-----RGQT

Query:  RSGKCYTPNPLEKEKRLARL
        +  K  T    E  K+L  L
Subjt:  RSGKCYTPNPLEKEKRLARL

A0A6J1E2J7 Ribonuclease H6.4e-4142.15Show/hide
Query:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE
        + +++K++V+ I TP+ +LF+ILL +GYVSVEYL P+   + Y+++L C FHAGAKGHSL++C+ FR +VQEL+D K+ TVA   Q +G     +V   E
Subjt:  KSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSFHAGAKGHSLDRCHHFRKRVQELMDMKVFTVA---QSRGFYPDNEVGTIE

Query:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR
        G S       +  K LTIF+ +K        KPITI +P PF+YKSSKAVPW Y+ KV++  +  +P L IDNIT V G TR+G+CYTP+ L K      
Subjt:  GLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSE--TPSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLAR

Query:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE
         E  + K  E++   +    K    LH     +   A V+++
Subjt:  LENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAGTACCCACCAGGTTATTATCCACCCTCGTATGGATATTACCCATATCAAGTAAATAGTGCATCTGCTCTATATGTTCCTTACTCAAGCCAAGGTTCAAGACC
AATGATGAATCAAGGCTTCCAGCCTCATAAGCAGCAACAGGTGGTCACCACTGGACAACAGGGCAACAAAAGTGTTGATGCAAAAGCACAGGTTTCAACAATTGTGACCC
CGTTGGAAAAACTTTTTAAAATTCTACTTGTTAATGGCTATGTATCTGTAGAATACTTATACCCAGATTCTACTCAAGAAGAATATAATGATAACTTGGCCTGTTCATTT
CACGCTGGGGCAAAAGGTCATTCTTTGGATCGATGTCACCACTTTCGCAAGAGGGTCCAAGAATTGATGGACATGAAGGTTTTTACTGTTGCACAATCTCGTGGCTTTTA
TCCAGATAATGAAGTGGGCACTATAGAAGGACTTTCCTCTAAAAAGGTTGGTTTAAATGTGCCTTTTAAACCTCTCACAATCTTTCATCGCAAAAAGACCACCCTACTTG
CTACTGATCTGAAGCCAATCACCATCCATATGCCAACTCCTTTTAAGTATAAAAGTTCGAAAGCAGTACCTTGGAGCTATGAATACAAGGTGTCTATCAACTCAGAAACA
CCGTCACTTCTTATCGACAATATCACCGAAGTGAGGGGCCAGACACGAAGTGGGAAATGTTATACTCCTAATCCGCTTGAAAAGGAAAAACGGTTAGCCAGATTGGAAAA
TCGTGAACTAAAGCATCAGGAAGAAAGGATTCCTCCTCTCTACCATTCTTTCAAAAGTGTTGGTGTACTTCATCCAAAGAGTTGTGGAGATTATGCAATCGCAACCGTGA
TTGAAGAAGAAGAAATAGGCCCATGGATCTACCCATGCCCAAAGAATTTCAAGCTTGACAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACAGTACCCACCAGGTTATTATCCACCCTCGTATGGATATTACCCATATCAAGTAAATAGTGCATCTGCTCTATATGTTCCTTACTCAAGCCAAGGTTCAAGACC
AATGATGAATCAAGGCTTCCAGCCTCATAAGCAGCAACAGGTGGTCACCACTGGACAACAGGGCAACAAAAGTGTTGATGCAAAAGCACAGGTTTCAACAATTGTGACCC
CGTTGGAAAAACTTTTTAAAATTCTACTTGTTAATGGCTATGTATCTGTAGAATACTTATACCCAGATTCTACTCAAGAAGAATATAATGATAACTTGGCCTGTTCATTT
CACGCTGGGGCAAAAGGTCATTCTTTGGATCGATGTCACCACTTTCGCAAGAGGGTCCAAGAATTGATGGACATGAAGGTTTTTACTGTTGCACAATCTCGTGGCTTTTA
TCCAGATAATGAAGTGGGCACTATAGAAGGACTTTCCTCTAAAAAGGTTGGTTTAAATGTGCCTTTTAAACCTCTCACAATCTTTCATCGCAAAAAGACCACCCTACTTG
CTACTGATCTGAAGCCAATCACCATCCATATGCCAACTCCTTTTAAGTATAAAAGTTCGAAAGCAGTACCTTGGAGCTATGAATACAAGGTGTCTATCAACTCAGAAACA
CCGTCACTTCTTATCGACAATATCACCGAAGTGAGGGGCCAGACACGAAGTGGGAAATGTTATACTCCTAATCCGCTTGAAAAGGAAAAACGGTTAGCCAGATTGGAAAA
TCGTGAACTAAAGCATCAGGAAGAAAGGATTCCTCCTCTCTACCATTCTTTCAAAAGTGTTGGTGTACTTCATCCAAAGAGTTGTGGAGATTATGCAATCGCAACCGTGA
TTGAAGAAGAAGAAATAGGCCCATGGATCTACCCATGCCCAAAGAATTTCAAGCTTGACAATTAG
Protein sequenceShow/hide protein sequence
MSQYPPGYYPPSYGYYPYQVNSASALYVPYSSQGSRPMMNQGFQPHKQQQVVTTGQQGNKSVDAKAQVSTIVTPLEKLFKILLVNGYVSVEYLYPDSTQEEYNDNLACSF
HAGAKGHSLDRCHHFRKRVQELMDMKVFTVAQSRGFYPDNEVGTIEGLSSKKVGLNVPFKPLTIFHRKKTTLLATDLKPITIHMPTPFKYKSSKAVPWSYEYKVSINSET
PSLLIDNITEVRGQTRSGKCYTPNPLEKEKRLARLENRELKHQEERIPPLYHSFKSVGVLHPKSCGDYAIATVIEEEEIGPWIYPCPKNFKLDN