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Tan0013955 (gene) of Snake gourd v1 genome

Gene IDTan0013955
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG10:49785526..49789752
RNA-Seq ExpressionTan0013955
SyntenyTan0013955
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046219.1 uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]4.6e-1855.67Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        M +A    K   DRLVE+EEQ+LYL + PD++RFLE +++E+ E    I A++ R +GLPI+EL  RVDTLE    R  S ERGDSSTGS AHIEER
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

TYK09782.1 uncharacterized protein E5676_scaffold127G00720 [Cucumis melo var. makuwa]2.1e-1846.83Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKAT--RPSSFERGDSSTGSAAHIEERS
        MS+A    K   DRL E+EE +LYL E PD++R+LE ++ E+ E +  I A++ R +GLPI+EL  RVDTLE   T  R  ++ERGDSS+G AAH+EER+
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKAT--RPSSFERGDSSTGSAAHIEERS

Query:  LPEAGVLVGRNRPFITH-KPINGPKD
           AG  +  +R  I   KP  G +D
Subjt:  LPEAGVLVGRNRPFITH-KPINGPKD

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.1e-2465.98Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MS  KQLSK+HVDRLVEIEEQLLYLRE PD +R LE ++ E  E  GEI A++AR DGLPI+++ +RV+TLE KATRP SFERGDSST     IE R
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]8.6e-2565.98Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MSA KQLSK+HVDRLVEIEEQLLYLRE PD++R LE ++ E  E  GEI A++AR DGLPI+++ +RV+T E KATRP SFERGDSST     IE R
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.3e-2056.7Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MS  KQL K+H+DRLVEIEE+LL+LRE PD +R++E ++ E+      I  ++AR DGL IREL LRV+TLEDK  R  + ERG+SS+ S AH+EER
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

TrEMBL top hitse value%identityAlignment
A0A5A7TY91 Retrotrans_gag domain-containing protein2.2e-1855.67Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        M +A    K   DRLVE+EEQ+LYL + PD++RFLE +++E+ E    I A++ R +GLPI+EL  RVDTLE    R  S ERGDSSTGS AHIEER
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

A0A5D3CER8 Retrotrans_gag domain-containing protein1.0e-1846.83Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKAT--RPSSFERGDSSTGSAAHIEERS
        MS+A    K   DRL E+EE +LYL E PD++R+LE ++ E+ E +  I A++ R +GLPI+EL  RVDTLE   T  R  ++ERGDSS+G AAH+EER+
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKAT--RPSSFERGDSSTGSAAHIEERS

Query:  LPEAGVLVGRNRPFITH-KPINGPKD
           AG  +  +R  I   KP  G +D
Subjt:  LPEAGVLVGRNRPFITH-KPINGPKD

A0A6J1D906 Reverse transcriptase5.5e-2565.98Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MS  KQLSK+HVDRLVEIEEQLLYLRE PD +R LE ++ E  E  GEI A++AR DGLPI+++ +RV+TLE KATRP SFERGDSST     IE R
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

A0A6J1DK29 uncharacterized protein LOC1110218294.2e-2565.98Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MSA KQLSK+HVDRLVEIEEQLLYLRE PD++R LE ++ E  E  GEI A++AR DGLPI+++ +RV+T E KATRP SFERGDSST     IE R
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

A0A6J1DLQ6 uncharacterized protein LOC1110223206.2e-2156.7Show/hide
Query:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER
        MS  KQL K+H+DRLVEIEE+LL+LRE PD +R++E ++ E+      I  ++AR DGL IREL LRV+TLEDK  R  + ERG+SS+ S AH+EER
Subjt:  MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGGCAAAGCAATTGAGCAAGACGCACGTCGACCGACTAGTCGAGATTGAAGAACAGCTGTTGTACTTGAGGGAAACACCTGACACGGTGCGATTCCTCGAAGA
CCAAATAAAAGAAGTCCAAGAGGCGGTGGGTGAGATAAGGGCCCTGAGTGCCCGATTTGATGGGTTACCGATAAGAGAACTGACATTGAGGGTCGATACCCTAGAAGACA
AAGCTACCCGTCCCAGTAGCTTCGAACGTGGAGATAGCTCCACCGGCTCTGCCGCACACATAGAGGAACGTAGTCTCCCTGAAGCTGGGGTCCTGGTCGGGAGAAATAGA
CCTTTTATCACCCACAAACCGATAAATGGACCGAAAGATTTAATTGCCTACTCGAAGAGTACTTACGCCACTTCGTCGACGCTCGACAGAAAAATTGGGTCCAGTTGCTG
GATGTGGCTCAATTTTGCTTCAATTGCCAAACTAGTTCTTCGTCTGGAAAGAGCCCCTTTGAGATCGTGTGCGGAAGACAACCAGCCCTGCCTCATATCGTCGATCATCC
ATATGCAGGGAAGAATCCTCAAGCCCATAACTTCACGAAGGAGTGGAAACAAACAACAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGGCAAAGCAATTGAGCAAGACGCACGTCGACCGACTAGTCGAGATTGAAGAACAGCTGTTGTACTTGAGGGAAACACCTGACACGGTGCGATTCCTCGAAGA
CCAAATAAAAGAAGTCCAAGAGGCGGTGGGTGAGATAAGGGCCCTGAGTGCCCGATTTGATGGGTTACCGATAAGAGAACTGACATTGAGGGTCGATACCCTAGAAGACA
AAGCTACCCGTCCCAGTAGCTTCGAACGTGGAGATAGCTCCACCGGCTCTGCCGCACACATAGAGGAACGTAGTCTCCCTGAAGCTGGGGTCCTGGTCGGGAGAAATAGA
CCTTTTATCACCCACAAACCGATAAATGGACCGAAAGATTTAATTGCCTACTCGAAGAGTACTTACGCCACTTCGTCGACGCTCGACAGAAAAATTGGGTCCAGTTGCTG
GATGTGGCTCAATTTTGCTTCAATTGCCAAACTAGTTCTTCGTCTGGAAAGAGCCCCTTTGAGATCGTGTGCGGAAGACAACCAGCCCTGCCTCATATCGTCGATCATCC
ATATGCAGGGAAGAATCCTCAAGCCCATAACTTCACGAAGGAGTGGAAACAAACAACAGAAATAG
Protein sequenceShow/hide protein sequence
MSAAKQLSKTHVDRLVEIEEQLLYLRETPDTVRFLEDQIKEVQEAVGEIRALSARFDGLPIRELTLRVDTLEDKATRPSSFERGDSSTGSAAHIEERSLPEAGVLVGRNR
PFITHKPINGPKDLIAYSKSTYATSSTLDRKIGSSCWMWLNFASIAKLVLRLERAPLRSCAEDNQPCLISSIIHMQGRILKPITSRRSGNKQQK