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Tan0013966 (gene) of Snake gourd v1 genome

Gene IDTan0013966
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG03:2478760..2488154
RNA-Seq ExpressionTan0013966
SyntenyTan0013966
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-0643.59Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV
        + VL     +VEIE  +PD LP S ESS   ++  ++L     H  +     ++RG++VCWLHAVFRAK   G GGGV
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-0638.61Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFH----RYLDNQQV---------------LLRGNNVCWLHAVFRAKLANGLGGGVTNI
        + VL     +VEIE  VPD LP S ESS   ++ +++L     H     Y  NQ +               ++RG++VCWLHAVFRAK   G GGGVT +
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFH----RYLDNQQV---------------LLRGNNVCWLHAVFRAKLANGLGGGVTNI

Query:  D
        +
Subjt:  D

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.7e-0840.74Show/hide
Query:  GVLGGPHYIV-------------------EIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQV-----------LLRGNNVCWLHAVFRAKLA
        GV GGPHYIV                   EIE LVPD LP S ESS   ++ +++    +F++  D +             ++R N+VCWLHAVFRAK+A
Subjt:  GVLGGPHYIV-------------------EIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQV-----------LLRGNNVCWLHAVFRAKLA

Query:  NGLGGGVT
         G GGGVT
Subjt:  NGLGGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-0643.59Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV
        + VL     +VEIE  +PD LP S ESS   ++  ++L     H  +     ++RG++VCWLHAVFRAK   G GGGV
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.8e-0638.61Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFH----RYLDNQQV---------------LLRGNNVCWLHAVFRAKLANGLGGGVTNI
        + VL     +VEIE  VPD LP S ESS   ++ +++L     H     Y  NQ +               ++RG++VCWLHAVFRAK   G GGGVT +
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFH----RYLDNQQV---------------LLRGNNVCWLHAVFRAKLANGLGGGVTNI

Query:  D
        +
Subjt:  D

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.0e-0641.86Show/hide
Query:  YIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVL---------------LRGNNVCWLHAVFRAKLANGLGGGVT
        ++VEIE  VPDILP S ESS   ++ +++L     H  +  + +L               +RG++VCWLHA+FRAK A G GGGVT
Subjt:  YIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVL---------------LRGNNVCWLHAVFRAKLANGLGGGVT

A0A5A7TKT0 Reverse transcriptase1.0e-0643.59Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV
        + VL     +VEIE  +PD LP S ESS   ++  ++L     H  +     ++RG++VCWLHAVFRAK   G GGGV
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV

A0A5D3BTP3 Reverse transcriptase3.0e-0641.86Show/hide
Query:  YIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVL---------------LRGNNVCWLHAVFRAKLANGLGGGVT
        ++VEIE  VPDILP S ESS   ++ +++L     H  +  + +L               +RG++VCWLHA+FRAK A G GGGVT
Subjt:  YIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVL---------------LRGNNVCWLHAVFRAKLANGLGGGVT

A0A5D3CAC6 Uncharacterized protein8.5e-0940.74Show/hide
Query:  GVLGGPHYIV-------------------EIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQV-----------LLRGNNVCWLHAVFRAKLA
        GV GGPHYIV                   EIE LVPD LP S ESS   ++ +++    +F++  D +             ++R N+VCWLHAVFRAK+A
Subjt:  GVLGGPHYIV-------------------EIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQV-----------LLRGNNVCWLHAVFRAKLA

Query:  NGLGGGVT
         G GGGVT
Subjt:  NGLGGGVT

A0A5D3D150 Reverse transcriptase1.0e-0643.59Show/hide
Query:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV
        + VL     +VEIE  +PD LP S ESS   ++  ++L     H  +     ++RG++VCWLHAVFRAK   G GGGV
Subjt:  MGVLGGPHYIVEIEFLVPDILPQSVESS---TTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGACCCCACTACATCGTAGAGATCGAGTTCCTGGTACCTGACATCCTACCACAGTCTGTTGAAAGCTCCACAACAGTTTTCATGGACCTCATGGG
TGGAGTTTTCCACCGATATTTGGATAATCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTCCGGGCTAAGTTAGCAAATGGTTTGGGAGGGG
GTGTGACAAATATAGATGGATACTTAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGACCCCACTACATCGTAGAGATCGAGTTCCTGGTACCTGACATCCTACCACAGTCTGTTGAAAGCTCCACAACAGTTTTCATGGACCTCATGGG
TGGAGTTTTCCACCGATATTTGGATAATCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTCCGGGCTAAGTTAGCAAATGGTTTGGGAGGGG
GTGTGACAAATATAGATGGATACTTAGCATAA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVEIEFLVPDILPQSVESSTTVFMDLMGGVFHRYLDNQQVLLRGNNVCWLHAVFRAKLANGLGGGVTNIDGYLA