; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013971 (gene) of Snake gourd v1 genome

Gene IDTan0013971
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationLG04:6142037..6146953
RNA-Seq ExpressionTan0013971
SyntenyTan0013971
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]3.2e-3971.64Show/hide
Query:  IFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAGSAQARH
        +F+LFCST+   SS   Q+ILPTESNYHQK NA KHG+DGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAGSAQA H
Subjt:  IFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAGSAQARH

Query:  RQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        RQGR RNAGN +ENNM LLVA+VLAAIAHL+ VF
Subjt:  RQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]4.5e-4170.71Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RRE+ L+F+LFCST+   SS   Q+ILPTESNYHQK NA KHG+DGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGR RNAGN +ENNM LLVA+VLAAI HL+ VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

XP_022987717.1 uncharacterized protein LOC111485159 [Cucurbita maxima]1.4e-4272.14Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RRE+ L+F+LFCST+   SS   Q+ILPTE NYHQK NA KHGQDGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGRPRNAGN +ENNM LLVA+VLAAIAHL+ VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]1.5e-4171.43Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RRE+ L+F+LFCST+   SS   Q+ILPTESNYHQK NA KHG+DGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGR RNAGN +ENNM LLVA+VLAAIAHL+ VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]3.6e-3867.86Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RR + LI +L CSTM  +S+   Q+I PTESNY QK    K  +DG+TNQI RRY A  ITVS+G+G G+A +GGG +GGGSRP+  GGGTAVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGRP NAGNRHENN  LLVAAVLAAIAHLY VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

TrEMBL top hitse value%identityAlignment
A0A6J1FZV5 uncharacterized protein LOC111449437 isoform X25.0e-3872.99Show/hide
Query:  MGRREMGLIFILFCSTMT-TASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAA
        MGR+EMGLIFILFCS M   ASSLQEILPTESN HQK N  KHG+DG TNQIGRR  A AITVS  V HG  A GG   GG S P+T  GG+AVIPIY A
Subjt:  MGRREMGLIFILFCSTMT-TASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAA

Query:  GSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL
        GSAQA+ R+GRP NAG RHENNM LLVAA LAAIAHL
Subjt:  GSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL

A0A6J1G000 uncharacterized protein LOC111449437 isoform X12.3e-3872.26Show/hide
Query:  MGRREMGLIFILFCSTMT-TASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAA
        MGR+EMGLIFILFCS M   ASSLQEILPTESN HQK N  KHG+DG TNQIGRR  A AITVS  V HG  AS GG  GGG   +   GG+AVIPIY A
Subjt:  MGRREMGLIFILFCSTMT-TASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAA

Query:  GSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL
        GSAQA+ R+GRP NAG RHENNM LLVAA LAAIAHL
Subjt:  GSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like2.2e-4170.71Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RRE+ L+F+LFCST+   SS   Q+ILPTESNYHQK NA KHG+DGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGR RNAGN +ENNM LLVA+VLAAI HL+ VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

A0A6J1HTB9 uncharacterized protein LOC111467612 isoform X27.3e-3771.74Show/hide
Query:  MGRREMGLIFILFCSTMTTASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGG--SRPNTGGGGTAVIPIYA
        MGRRE+GLIFILF S M  ASSLQEIL TESN HQK N  KHG+DG TNQIGRR  A AITVS  V HG  AS GG   GG  S P+T GGG+AVIPIY 
Subjt:  MGRREMGLIFILFCSTMTTASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGG--SRPNTGGGGTAVIPIYA

Query:  AGSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL
        AGSAQA+ R+GRP NAGNRHEN+M LLVAA LAA AHL
Subjt:  AGSAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHL

A0A6J1JB47 uncharacterized protein LOC1114851596.8e-4372.14Show/hide
Query:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG
        RRE+ L+F+LFCST+   SS   Q+ILPTE NYHQK NA KHGQDGVTN+I   Y A AITVS G+GHG+AA GGG +GGG RP  GGGG AVIP+YAAG
Subjt:  RREMGLIFILFCSTMTTASSL--QEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAG

Query:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF
        SAQA HRQGRPRNAGN +ENNM LLVA+VLAAIAHL+ VF
Subjt:  SAQARHRQGRPRNAGNRHENNMALLVAAVLAAIAHLYRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAGAGATGGGATTGATTTTCATACTGTTTTGTTCTACCATGACCACTGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTACCACCAGAAACC
TAACGCAGGAAAACATGGCCAAGATGGGGTTACTAACCAGATTGGCAGAAGATACGGTGCAAATGCAATCACCGTTTCTCATGGGGTTGGTCATGGAAATGCTGCCAGCG
GAGGCGGCGGAGATGGTGGTGGCAGTAGACCAAATACAGGAGGAGGAGGTACCGCCGTAATCCCTATTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAGGGTCGA
CCGCGCAATGCTGGAAATCGCCATGAGAACAACATGGCGCTTCTGGTAGCTGCAGTTTTGGCTGCCATTGCGCATCTGTACAGAGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
CCGTAATTTTGTACTGTTTGACGTAGGAGAAAACTGTAAAAGTATGTCAAATTCGATTCTAATGGTTATTAGAGTGTGCATGGATATATTTTTTAATCTATATTCAATAG
TTAATTGAGAGACAACCTAATAACTTTTTCCGTAGTATAAATACTCTTCTATTTATTATCAAGCCACATCAATATCATTTAAGACTTAAGAGTGGTGTGAAGTCTAACAA
AATTAAAGCATTAACTAATAATAAAACAAAAGTTTAAATACTATTTTGGTCTTTGTACTTTCAAAATAATTGTTTTCGCCCCTATAGTTTTAAAAAGTGACCATAGTTTT
AAAAAGTGACCAATTTAGTTCTCTTTGCAAAATTTAAGCATAAATTTATACACAATGGAAACCTTTTCATATAAAATTATGACTACATTTCAAGAATTTTAGTAGGTGAA
GTATCATGGTAAAATATTGATCGAAAAAAATGAAGGGACAAAAATAAAATTTTTGAAACTACAAGGACCAAAATGAAATGAATAGAAACTAAAAGTATAAGACCAAAATG
AACAAAAACAAAATTTATAGTGTGGACGGAGAGAATGTATTATGAGAATACTAAAAATTCATCATAATATGATGATAAATTATTCAATGAGGCCACTCTTAATAACCGTT
AAATATAAATTCGAAAACTTTCATGCCACTTAATACTTTTCCAGTTTTTCTTCCCTATATACAACCATACAAAATTATGCATATACAACTATACAAAATTGTCTACTATA
ATATACCAGTCTCCTCACCTAGACAGTTTTGATTACCATCAAACAACAGTAAATCAGTATGATAGTGGGAAACCGTGTGTAATGGTCTTAAACAGTTTTTTTTTTTTTTT
AAAAAAAAGATTCGAGTTCGTGTTTCTTTTTAAAAGGATGTCTCTTTACTTATTCTAAACCCTCAAAAGAGATAAGATCGCTTAAGTCTTCGTCTTCCCCACTCACCCAC
CGTTTAGTATAAATAAACCAGAGCATTAATCTAATAACCACATAGAGAGATCTAGAAGAGAGAAGCTATATGTACGAAAATGGGAAGAAGAGAGATGGGATTGATTTTCA
TACTGTTTTGTTCTACCATGACCACTGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTACCACCAGAAACCTAACGCAGGAAAACATGGCCAAGATGGGGTT
ACTAACCAGATTGGCAGAAGATACGGTGCAAATGCAATCACCGTTTCTCATGGGGTTGGTCATGGAAATGCTGCCAGCGGAGGCGGCGGAGATGGTGGTGGCAGTAGACC
AAATACAGGAGGAGGAGGTACCGCCGTAATCCCTATTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAGGGTCGACCGCGCAATGCTGGAAATCGCCATGAGAACA
ACATGGCGCTTCTGGTAGCTGCAGTTTTGGCTGCCATTGCGCATCTGTACAGAGTTTTCTAACATCGAGGCGGCCTCCATCGGGACCATCCAGGAAAGAGCTGTAATGTG
TTGAACCAATTCGAAACCATCACTAGCAAATAAATACAGCTGGGTTGGTTATGAAGAGGAAAAATAACCGAAGGCTCTCGAATCTGTTGAAAGCTGCTAAAGCAATCAAA
TCAGTTGTAATTTCTTGTACACTACTTGTTACCTTCGATCAAGATCTTCCAATTTGGAATCTTCTCCTGATCCTTTAATAATAATAAAAATATTCTGCCATGGTCCCTTC
ACGGTGGATGTAAGAAATCTTTGCTGAA
Protein sequenceShow/hide protein sequence
MGRREMGLIFILFCSTMTTASSLQEILPTESNYHQKPNAGKHGQDGVTNQIGRRYGANAITVSHGVGHGNAASGGGGDGGGSRPNTGGGGTAVIPIYAAGSAQARHRQGR
PRNAGNRHENNMALLVAAVLAAIAHLYRVF