CuGenDBv2

Gene ID	Tan0014010
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CcmF_C domain-containing protein
Genome location	LG04:40810595..40811750
RNA-Seq Expression	Tan0014010
Synteny	Tan0014010
Gene Ontology terms	GO:0017004 - cytochrome complex assembly (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR044955 - Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4277251.1 unnamed protein product [Prunus armeniaca]

1.8e-47

58.73

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW----------RRSSGYGASRHFFDGPPSARPSARSEEFMG
        EH+                    +VAIHTNPFTDLYASIG GSSR G W           +SSG GASRHFFDGP      ARSEEFMG
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW----------RRSSGYGASRHFFDGPPSARPSARSEEFMG

CAB4307663.1 unnamed protein product [Prunus armeniaca]

8.8e-39

60.4

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW
        EH+                    +VAIHTNPFTDLYASIG GSSR G W
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW

KJB09756.1 hypothetical protein B456_001G162300 [Gossypium raimondii]

4.3e-70

58.99

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------
        MVR RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLH PT HSICGNLMIYKPS+TNDRL+FE+D+SLR  P+L                       
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------

Query:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDG--PPSARPSARSEEFMGGEPPRQ-GRALLTKPSLV-
                        R      +VAIHTN FTDLYASIG GSSR G W +SSG GASRHFFDG  PP+ RP+ R   FMG    RQ GRALLTKPSLV 
Subjt:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDG--PPSARPSARSEEFMGGEPPRQ-GRALLTKPSLV-

Query:  --------------LADRRW------------EKGSLSSPDGRGQSPITFCASLWSFSLAFPRPLELELVDRPLSTSD
                      L  R W            EKGSLSSPD RG+SPITF A LWSFSLAFPRP  LELVDRPLSTSD
Subjt:  --------------LADRRW------------EKGSLSSPDGRGQSPITFCASLWSFSLAFPRPLELELVDRPLSTSD

TKS02629.1 hypothetical protein D5086_0000160300 [Populus alba]

5.1e-39

45.27

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPTSHSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDGPPSARPSARSE---EFMGGEPPRQGRALLTK-----
        EH+                    +VAIHTN FTDLYASIG GSSR G W   +G  A   +      A+PS       E  G    R+   L+ K     
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDGPPSARPSARSE---EFMGGEPPRQGRALLTK-----

Query:  -PSLVLADRRWEKGSLSSPDG-RGQSPITFCASLWSFSLAFPR
           L L ++  E G      G  G  P     S W+  + F +
Subjt:  -PSLVLADRRWEKGSLSSPDG-RGQSPITFCASLWSFSLAFPR

YP_009414558.1 CcMFc [Spinacia oleracea]

6.7e-39

61.22

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLR-----VRPILSRSDDEH-----------
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRLIFE+++SLR     +  +L     EH           
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLR-----VRPILSRSDDEH-----------

Query:  --------------------DQVAIHTNPFTDLYASIGIGSSRIGRW
                             +VAIHTNPFTDLYASIG GSSR G W
Subjt:  --------------------DQVAIHTNPFTDLYASIGIGSSRIGRW

TrEMBL top hits

e value

%identity

Alignment

A0A0D2PZN2 Uncharacterized protein

2.1e-70

58.99

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------
        MVR RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLH PT HSICGNLMIYKPS+TNDRL+FE+D+SLR  P+L                       
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------

Query:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDG--PPSARPSARSEEFMGGEPPRQ-GRALLTKPSLV-
                        R      +VAIHTN FTDLYASIG GSSR G W +SSG GASRHFFDG  PP+ RP+ R   FMG    RQ GRALLTKPSLV 
Subjt:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDG--PPSARPSARSEEFMGGEPPRQ-GRALLTKPSLV-

Query:  --------------LADRRW------------EKGSLSSPDGRGQSPITFCASLWSFSLAFPRPLELELVDRPLSTSD
                      L  R W            EKGSLSSPD RG+SPITF A LWSFSLAFPRP  LELVDRPLSTSD
Subjt:  --------------LADRRW------------EKGSLSSPDGRGQSPITFCASLWSFSLAFPRPLELELVDRPLSTSD

A0A343FNH1 CcMFc

3.3e-39

61.22

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLR-----VRPILSRSDDEH-----------
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRLIFE+++SLR     +  +L     EH           
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLR-----VRPILSRSDDEH-----------

Query:  --------------------DQVAIHTNPFTDLYASIGIGSSRIGRW
                             +VAIHTNPFTDLYASIG GSSR G W
Subjt:  --------------------DQVAIHTNPFTDLYASIGIGSSRIGRW

A0A4U5PZ81 Uncharacterized protein

2.5e-39

45.27

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPTSHSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDGPPSARPSARSE---EFMGGEPPRQGRALLTK-----
        EH+                    +VAIHTN FTDLYASIG GSSR G W   +G  A   +      A+PS       E  G    R+   L+ K     
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRWRRSSGYGASRHFFDGPPSARPSARSE---EFMGGEPPRQGRALLTK-----

Query:  -PSLVLADRRWEKGSLSSPDG-RGQSPITFCASLWSFSLAFPR
           L L ++  E G      G  G  P     S W+  + F +
Subjt:  -PSLVLADRRWEKGSLSSPDG-RGQSPITFCASLWSFSLAFPR

A0A6J5UM80 Uncharacterized protein

8.5e-48

58.73

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW----------RRSSGYGASRHFFDGPPSARPSARSEEFMG
        EH+                    +VAIHTNPFTDLYASIG GSSR G W           +SSG GASRHFFDGP      ARSEEFMG
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW----------RRSSGYGASRHFFDGPPSARPSARSEEFMG

A0A6J5X9C7 CcmF_C domain-containing protein

4.3e-39

60.4

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD
        MVR+RSTNTKKIQFTQRLPLGSELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRL+FE+D+SLR   +L                     + 
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSR------------------SDD

Query:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW
        EH+                    +VAIHTNPFTDLYASIG GSSR G W
Subjt:  EHD--------------------QVAIHTNPFTDLYASIGIGSSRIGRW

SwissProt top hits

e value

%identity

Alignment

P38451 Uncharacterized mitochondrial protein ymf2

3.4e-17

62.16

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Query:  TNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSRS
        +N KKIQFT + PLGSELH+GK R  LRGID LHGPT HSICGN +IYKPS+     +FE+D S   RP L +S
Subjt:  TNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSRS

P93286 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

2.3e-34

53.69

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------
        M+ V  +NTKKIQFTQRLPLG ELHMGKERCCLRG+DHLHGPT HSICGNLMIYK S+TNDRL+FE+D+SL    +L                       
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------

Query:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRW
                        R      +VAIHTN FTDLYA IG GSSR G W
Subjt:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRW

Arabidopsis top hits

e value

%identity

Alignment

ATMG00180.1 cytochrome C biogenesis 452

3.9e-37

55.03

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Query:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------
        M+ V  +NTKKIQFTQRLPLG ELHMGKERCCLRG+DHLHGPT HSICGNLMIYKPS+TNDRL+FE+D+SL    +L                       
Subjt:  MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPIL-----------------------

Query:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRW
                        R      +VAIHTN FTDLYASIG GSSR G W
Subjt:  ---------------SRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGRW

Sequences

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CDS sequence

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ATGGTGCGGGTTAGGTCAACTAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTCCGAACTCCATATGGGGAAAGAGCGTTGTTGTTTGCGAGGTATCGA
TCATTTACATGGACCCACTTCTCATTCCATTTGTGGTAATTTAATGATCTATAAACCGTCCATAACGAACGATCGGCTCATCTTTGAGAATGATAAATCACTTCGTGTTA
GACCAATACTTTCAAGAAGCGACGACGAGCACGATCAAGTAGCTATACATACAAATCCATTTACGGATCTATATGCTTCGATTGGAATTGGAAGTTCCAGAATCGGGCGG
TGGAGGAGAAGTAGTGGCTACGGCGCGTCAAGGCACTTCTTCGACGGTCCCCCATCCGCCCGCCCATCGGCCCGCTCTGAAGAATTCATGGGCGGCGAGCCTCCGAGACA
GGGGCGGGCACTACTAACTAAGCCAAGCCTAGTTCTCGCCGATAGGCGCTGGGAAAAGGGGTCTCTTTCCTCGCCCGATGGTAGAGGTCAATCCCCTATCACCTTCTGTG
CCTCCTTGTGGTCCTTCTCTTTAGCTTTTCCTCGGCCTTTAGAGTTAGAGCTAGTTGATAGGCCACTTTCCACATCCGATCAAGGGATTCTTCGTCGGATTCGCTCAAGC
CATTGCAAATAA

mRNA sequence

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Protein sequence

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MVRVRSTNTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNLMIYKPSITNDRLIFENDKSLRVRPILSRSDDEHDQVAIHTNPFTDLYASIGIGSSRIGR
WRRSSGYGASRHFFDGPPSARPSARSEEFMGGEPPRQGRALLTKPSLVLADRRWEKGSLSSPDGRGQSPITFCASLWSFSLAFPRPLELELVDRPLSTSDQGILRRIRSS
HCK

Tan0014010 (gene) of Snake gourd v1 genome