; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014056 (gene) of Snake gourd v1 genome

Gene IDTan0014056
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG08:25477244..25480584
RNA-Seq ExpressionTan0014056
SyntenyTan0014056
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]2.6e-4352.44Show/hide
Query:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI
        EVD          ++   TSNEWSQWRD+LA++I++ +SR PKH+WTK E+A LVECL+ LV +GGWRSDNGTFRPGYL +L  MM  +IPG+ I +STI
Subjt:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI

Query:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGW----VKVALNILLIIYNYIS
        D RI+ +K+ +  +AEM G  CS FGWNDE KC+  EKE F+ W     K  LN   + Y+ +S
Subjt:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGW----VKVALNILLIIYNYIS

ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]9.1e-0452.73Show/hide
Query:  MDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEHQSPLLRHQIRQLACFQLIH
        MD  EL +I+ AF ++Q QLLL+LE+  ND +RI H     RH+IRQLA F++IH
Subjt:  MDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEHQSPLLRHQIRQLACFQLIH

ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]6.1e-4054.79Show/hide
Query:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI
        EVD          ++    SNEW+ WRDDLA++II+ +SR PKH+WTK E+A LVECLL LV +GGWR DN TFRP YL +L  MM  +IPG+ I + TI
Subjt:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI

Query:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK
        D RI+ LK+ +  IAEM G+ CS F WNDE KC+  EKE F+ WVK
Subjt:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK

KAA0035078.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-3940.83Show/hide
Query:  LIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEVD-----------------------------GPF------FEENPTILYKFNTSNEWSQWRDD
        +IHESDL+C +STRMDR+ FAI C LL+    L   E+                               P+       +E   +      +NE+   +  
Subjt:  LIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEVD-----------------------------GPF------FEENPTILYKFNTSNEWSQWRDD

Query:  LAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYREIAEMLGTGCSRFGWN
         A+ +I       K  WTK E+  LVECL+ LV  GGW+SDNGTFRPGYL +L  MM E++PG  ++++T IDCRI+TLK+ ++ IAEM G  CS FGWN
Subjt:  LAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYREIAEMLGTGCSRFGWN

Query:  DEFKCVEVEKETFNGWVK
        DE KC+  EKE F+ WV+
Subjt:  DEFKCVEVEKETFNGWVK

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-3755.22Show/hide
Query:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTIDCRIRTLKKHYRE
        T+NEWSQWRDDLA  +     +S ++RAP+H WT+ E+  LVECL+ LV  GGW+SDNGTFR GYL +L  MM E++      ++ IDCRI+TLK+ ++ 
Subjt:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTIDCRIRTLKKHYRE

Query:  IAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVKV
        IAEM G  CS FGWNDE KC+  EKE F+ WV+V
Subjt:  IAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVKV

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-1157.14Show/hide
Query:  MNDHRRIEHQSPLLRHQIRQLACFQLIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEV
        MN+++R+ H  P  RH+IR+LA F++IHESDL+CR+STRMDRR FAILC LL+    L   E+
Subjt:  MNDHRRIEHQSPLLRHQIRQLACFQLIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEV

KAA0036924.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-4056.72Show/hide
Query:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYR
        T+NEWSQWRD+LA  +     +S ++RAP+H WT+ E+  LVECL+ LV  GGW+SDNGTFRPGYL +L  MM E++PG  ++++T IDCRI+TLK+ ++
Subjt:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYR

Query:  EIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK
         IAEM G  CS FGWNDE KC+  EKE F+ WV+
Subjt:  EIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK

TrEMBL top hitse value%identityAlignment
A0A5A7SWU2 Retrotransposon protein1.5e-3940.83Show/hide
Query:  LIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEVD-----------------------------GPF------FEENPTILYKFNTSNEWSQWRDD
        +IHESDL+C +STRMDR+ FAI C LL+    L   E+                               P+       +E   +      +NE+   +  
Subjt:  LIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEVD-----------------------------GPF------FEENPTILYKFNTSNEWSQWRDD

Query:  LAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYREIAEMLGTGCSRFGWN
         A+ +I       K  WTK E+  LVECL+ LV  GGW+SDNGTFRPGYL +L  MM E++PG  ++++T IDCRI+TLK+ ++ IAEM G  CS FGWN
Subjt:  LAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYREIAEMLGTGCSRFGWN

Query:  DEFKCVEVEKETFNGWVK
        DE KC+  EKE F+ WV+
Subjt:  DEFKCVEVEKETFNGWVK

A0A5A7SYW1 Retrotransposon protein6.1e-3855.22Show/hide
Query:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTIDCRIRTLKKHYRE
        T+NEWSQWRDDLA  +     +S ++RAP+H WT+ E+  LVECL+ LV  GGW+SDNGTFR GYL +L  MM E++      ++ IDCRI+TLK+ ++ 
Subjt:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTIDCRIRTLKKHYRE

Query:  IAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVKV
        IAEM G  CS FGWNDE KC+  EKE F+ WV+V
Subjt:  IAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVKV

A0A5A7SYW1 Retrotransposon protein2.2e-1157.14Show/hide
Query:  MNDHRRIEHQSPLLRHQIRQLACFQLIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEV
        MN+++R+ H  P  RH+IR+LA F++IHESDL+CR+STRMDRR FAILC LL+    L   E+
Subjt:  MNDHRRIEHQSPLLRHQIRQLACFQLIHESDLICRESTRMDRRCFAILCTLLKTSGNLIGAEV

A0A5A7T091 Retrotransposon protein2.9e-4056.72Show/hide
Query:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYR
        T+NEWSQWRD+LA  +     +S ++RAP+H WT+ E+  LVECL+ LV  GGW+SDNGTFRPGYL +L  MM E++PG  ++++T IDCRI+TLK+ ++
Subjt:  TSNEWSQWRDDLAQQI-----ISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSST-IDCRIRTLKKHYR

Query:  EIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK
         IAEM G  CS FGWNDE KC+  EKE F+ WV+
Subjt:  EIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK

E5GCB5 Retrotransposon protein1.3e-4352.44Show/hide
Query:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI
        EVD          ++   TSNEWSQWRD+LA++I++ +SR PKH+WTK E+A LVECL+ LV +GGWRSDNGTFRPGYL +L  MM  +IPG+ I +STI
Subjt:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI

Query:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGW----VKVALNILLIIYNYIS
        D RI+ +K+ +  +AEM G  CS FGWNDE KC+  EKE F+ W     K  LN   + Y+ +S
Subjt:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGW----VKVALNILLIIYNYIS

E5GCB5 Retrotransposon protein4.4e-0452.73Show/hide
Query:  MDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEHQSPLLRHQIRQLACFQLIH
        MD  EL +I+ AF ++Q QLLL+LE+  ND +RI H     RH+IRQLA F++IH
Subjt:  MDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEHQSPLLRHQIRQLACFQLIH

E5GCB5 Retrotransposon protein2.9e-4054.79Show/hide
Query:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI
        EVD          ++    SNEW+ WRDDLA++II+ +SR PKH+WTK E+A LVECLL LV +GGWR DN TFRP YL +L  MM  +IPG+ I + TI
Subjt:  EVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGTPIQSSTI

Query:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK
        D RI+ LK+ +  IAEM G+ CS F WNDE KC+  EKE F+ WVK
Subjt:  DCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAATACTTATATTATTTTGTTTATTTTTGCTTGCAGGTTTGGATCTAGGACATTGTCCACCCTAGTTCGAGGTTCGTTTAATTACAGATTGATATTAATGCTTTC
TCGTACTATGGACCCGCGAGAACTAGTTGCCATACTAACAGCTTTCACCTCAACCCAACATCAATTACTTCTGATATTAGAGATATATATGAATGACCATAGGAGAATAG
AACACCAATCACCTTTACTCAGACATCAAATTAGGCAGCTAGCATGTTTCCAACTCATCCACGAGTCCGACCTAATATGTCGTGAGAGTACAAGGATGGACAGAAGATGT
TTCGCCATTCTTTGTACCCTACTTAAGACATCTGGCAATTTAATAGGGGCAGAAGTAGATGGGCCATTCTTCGAGGAAAATCCAACTATCCTGTACAAATTCAATACCTC
TAATGAATGGAGCCAGTGGAGAGATGATTTGGCCCAACAAATAATATCAGGTACATCGAGAGCTCCTAAGCACTCGTGGACTAAGCATGAGGATGCGAAATTGGTGGAGT
GTCTTTTGTCATTAGTTCAGTCTGGTGGTTGGAGATCGGACAATGGCACATTTCGCCCTGGGTACCTGATGAAACTCCAACACATGATGGTGGAGAGGATACCGGGCACT
CCAATTCAATCATCCACCATAGATTGCAGGATACGAACTTTAAAAAAACATTATCGTGAGATTGCAGAGATGTTAGGGACAGGATGCAGTCGTTTCGGTTGGAACGATGA
ATTCAAGTGTGTTGAGGTGGAGAAGGAGACGTTCAATGGTTGGGTAAAGGTAGCGTTGAATATTTTACTTATCATATATAATTATATAAGTGACATTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATAAATACTTATATTATTTTGTTTATTTTTGCTTGCAGGTTTGGATCTAGGACATTGTCCACCCTAGTTCGAGGTTCGTTTAATTACAGATTGATATTAATGCTTTC
TCGTACTATGGACCCGCGAGAACTAGTTGCCATACTAACAGCTTTCACCTCAACCCAACATCAATTACTTCTGATATTAGAGATATATATGAATGACCATAGGAGAATAG
AACACCAATCACCTTTACTCAGACATCAAATTAGGCAGCTAGCATGTTTCCAACTCATCCACGAGTCCGACCTAATATGTCGTGAGAGTACAAGGATGGACAGAAGATGT
TTCGCCATTCTTTGTACCCTACTTAAGACATCTGGCAATTTAATAGGGGCAGAAGTAGATGGGCCATTCTTCGAGGAAAATCCAACTATCCTGTACAAATTCAATACCTC
TAATGAATGGAGCCAGTGGAGAGATGATTTGGCCCAACAAATAATATCAGGTACATCGAGAGCTCCTAAGCACTCGTGGACTAAGCATGAGGATGCGAAATTGGTGGAGT
GTCTTTTGTCATTAGTTCAGTCTGGTGGTTGGAGATCGGACAATGGCACATTTCGCCCTGGGTACCTGATGAAACTCCAACACATGATGGTGGAGAGGATACCGGGCACT
CCAATTCAATCATCCACCATAGATTGCAGGATACGAACTTTAAAAAAACATTATCGTGAGATTGCAGAGATGTTAGGGACAGGATGCAGTCGTTTCGGTTGGAACGATGA
ATTCAAGTGTGTTGAGGTGGAGAAGGAGACGTTCAATGGTTGGGTAAAGGTAGCGTTGAATATTTTACTTATCATATATAATTATATAAGTGACATTGCATAA
Protein sequenceShow/hide protein sequence
MINTYIILFIFACRFGSRTLSTLVRGSFNYRLILMLSRTMDPRELVAILTAFTSTQHQLLLILEIYMNDHRRIEHQSPLLRHQIRQLACFQLIHESDLICRESTRMDRRC
FAILCTLLKTSGNLIGAEVDGPFFEENPTILYKFNTSNEWSQWRDDLAQQIISGTSRAPKHSWTKHEDAKLVECLLSLVQSGGWRSDNGTFRPGYLMKLQHMMVERIPGT
PIQSSTIDCRIRTLKKHYREIAEMLGTGCSRFGWNDEFKCVEVEKETFNGWVKVALNILLIIYNYISDIA