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Tan0014073 (gene) of Snake gourd v1 genome

Gene IDTan0014073
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:5485272..5485769
RNA-Seq ExpressionTan0014073
SyntenyTan0014073
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023881690.1 uncharacterized protein LOC111994061 [Quercus suber]7.0e-1737.23Show/hide
Query:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA
        FKLN DA +F   N SG+G ++R+    VM  ++   P +      EA+A R  +  A + GF  L +E D++ V+  I  +R ++S LG+I ++I+ +A
Subjt:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA

Query:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
         + ++C F    R +NA+AH LAR ASNL +E  W+E
Subjt:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

XP_023885847.1 keratin, type I cytoskeletal 13-like [Quercus suber]2.4e-1740.29Show/hide
Query:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE
        S +KLN DA IF + N SG GA+IR+E   VM  ++   P  +     EA+A R  +  A E GF +L +E D++LV+N I  + +N S LG+I E+I+ 
Subjt:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE

Query:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        + R ++  + S   R  N +AH LARHA  +++E  WME
Subjt:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

XP_023887924.1 uncharacterized protein LOC112000051 [Quercus suber]2.4e-1740.29Show/hide
Query:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE
        S +KLN DA IF + N SG GA+IR+E   VM  ++   P  +     EA+A R  +  A E GF +L +E D++LV+N I  + +N S LG+I E+I+ 
Subjt:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE

Query:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        + R ++  + S   R  N +AH LARHA  +++E  WME
Subjt:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

XP_023899877.1 uncharacterized protein LOC112011763 [Quercus suber]5.4e-1740.29Show/hide
Query:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE
        S +KLN DA IF + N SG GA+IR+E   VM  ++   P  +     EA+A R  +  A E GF +L +E D++LV+N I  + +N S LG+I E+I+ 
Subjt:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE

Query:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        + R ++  + S   R  N +AH LARHA  +++E  WME
Subjt:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

XP_023928118.1 uncharacterized protein LOC112039474 [Quercus suber]9.1e-1738.85Show/hide
Query:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE
        S FKLN DA +F   + SG+GA+IR+EN  VM T+   +P +++ V  E IA R  +  A + GF  L VE D+  V+  +  +  + S LG+II++IK 
Subjt:  SNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKE

Query:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        + R  +  +FS+  R +N++A+ LAR+A ++ E+  WME
Subjt:  MARKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

TrEMBL top hitse value%identityAlignment
A0A2N9EZZ2 Uncharacterized protein2.1e-1432.12Show/hide
Query:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA
        +K+N D  +F+  N +G+G ++RD    VM ++T+ + + + V ++EA AV+  +  A E+G  + + E DS  ++N ++    + +  G ++ + KE+A
Subjt:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA

Query:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
         K++N +FS   R  N LAH LAR A +      WME
Subjt:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

A0A2N9FY90 RNase H domain-containing protein2.1e-1434.56Show/hide
Query:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR
        K+N D  +F   N+ G+G +IR+E    M  +++ IP+      +EA+A+R  L++A E+GF  + +E DS +V+          S  G+II +++++A 
Subjt:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR

Query:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        +M  C FS   R++N +AH LAR A N+ +   WME
Subjt:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

A0A2N9I6L8 Reverse transcriptase domain-containing protein8.3e-1632.35Show/hide
Query:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR
        K+N D  +F     +G+G VIRDE    M ++++ +P+      VEA+A+R  + +A E+GFY + VE DS +++  +     + +  G+++E+++ + +
Subjt:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR

Query:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
        +M +C F++  R+ N +AHPLAR A+++ +   WME
Subjt:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

A0A2N9INS6 RNase H domain-containing protein2.1e-1432.12Show/hide
Query:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA
        +K+N D  +F+  N +G+G ++RD    VM ++T+ + + + V ++EA AV+  +  A E+G  + + E DS  ++N ++    + +  G ++ + KE+A
Subjt:  FKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMA

Query:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
         K++N +FS   R  N LAH LAR A +      WME
Subjt:  RKMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

A0A7N2KZZ0 RNase H domain-containing protein2.1e-1436.76Show/hide
Query:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR
        K+N D  IF  ++ +G+  V+RD+   V+ ++++ IP    V  VE IA R  L++ARELGF ++ VE DS ++I  I +     S+LG+I+E+I+ ++R
Subjt:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR

Query:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME
           + +F    R  N +AH LA H S       WME
Subjt:  KMKNCTFSWCDRRSNALAHPLARHASNLTEETAWME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.8e-0524Show/hide
Query:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR
        K NTDAT      R G+G ++R+E+  V++   + +P    V+  E  A+R  ++      + ++  E+D+  ++NL++ +      L   +E+I+++  
Subjt:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR

Query:  KMKNCTFSWCDRRSNALAHPLARHA
          +   F +  R  N +A  +AR +
Subjt:  KMKNCTFSWCDRRSNALAHPLARHA

AT4G29090.1 Ribonuclease H-like superfamily protein5.9e-0626.4Show/hide
Query:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR
        K NTDAT  R+  R G+G V+R+E   V +   + +P +  V+  E  A+R  ++      +  +  E+DS ++I +++ N +    L   I++++ +  
Subjt:  KLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMAR

Query:  KMKNCTFSWCDRRSNALAHPLARHA
        +     F +  R  N LA  +AR +
Subjt:  KMKNCTFSWCDRRSNALAHPLARHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTTCCCGGTTTTCCAATTTTAAATTAAATACTGATGCAACGATCTTTAGAAATGAGAATCGAAGTGGAATGGGTGCAGTGATACGAGATGAAAATGAGAATGT
GATGTTTACCGTGACCAAACCTATCCCATGGATTATAGAAGTGGTGACTGTTGAAGCAATTGCGGTTCGAGATGTGTTGATTATGGCAAGGGAACTGGGATTTTATCAGC
TAAAAGTGGAAACAGACTCATCGTTGGTGATCAACCTCATACATCAAAATCGTCAAAATCAGTCGGAGTTAGGGTACATAATCGAAGAAATAAAGGAAATGGCAAGGAAG
ATGAAGAATTGTACTTTCTCATGGTGTGATCGAAGATCTAATGCCCTAGCACATCCCCTAGCAAGACATGCAAGCAATCTGACGGAAGAGACGGCATGGATGGAACGAGA
AGCAAGTTTTATTTCCTTTAATTTTTATTGTATTTCATTATTCATAAAAAAAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTTCCCGGTTTTCCAATTTTAAATTAAATACTGATGCAACGATCTTTAGAAATGAGAATCGAAGTGGAATGGGTGCAGTGATACGAGATGAAAATGAGAATGT
GATGTTTACCGTGACCAAACCTATCCCATGGATTATAGAAGTGGTGACTGTTGAAGCAATTGCGGTTCGAGATGTGTTGATTATGGCAAGGGAACTGGGATTTTATCAGC
TAAAAGTGGAAACAGACTCATCGTTGGTGATCAACCTCATACATCAAAATCGTCAAAATCAGTCGGAGTTAGGGTACATAATCGAAGAAATAAAGGAAATGGCAAGGAAG
ATGAAGAATTGTACTTTCTCATGGTGTGATCGAAGATCTAATGCCCTAGCACATCCCCTAGCAAGACATGCAAGCAATCTGACGGAAGAGACGGCATGGATGGAACGAGA
AGCAAGTTTTATTTCCTTTAATTTTTATTGTATTTCATTATTCATAAAAAAAGGGTAA
Protein sequenceShow/hide protein sequence
METSRFSNFKLNTDATIFRNENRSGMGAVIRDENENVMFTVTKPIPWIIEVVTVEAIAVRDVLIMARELGFYQLKVETDSSLVINLIHQNRQNQSELGYIIEEIKEMARK
MKNCTFSWCDRRSNALAHPLARHASNLTEETAWMEREASFISFNFYCISLFIKKG