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Tan0014155 (gene) of Snake gourd v1 genome

Gene IDTan0014155
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
Genome locationLG08:6309952..6310371
RNA-Seq ExpressionTan0014155
SyntenyTan0014155
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010670097.1 PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]4.0e-0532.28Show/hide
Query:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKG-SNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKIS
        G+G +  ++   ++  G   F + W  +I EAK +   ++    LAK  S   IEVESD +  ++ L   K   SE +L +++ L L+ SF +  +C + 
Subjt:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKG-SNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKIS

Query:  RDENKVAHELATLTSSLKGFLVWNEHF
        R  NKVAH LA L     G   W + F
Subjt:  RDENKVAHELATLTSSLKGFLVWNEHF
XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]7.5e-0430.4Show/hide
Query:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNL-PIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKIS
        G+G +V ++   ++  G +     W ++I EAK    ++E  + +A G  +  + VESD ++V++ L    ++LSE+SL I++ L L +SF +  +  + 
Subjt:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNL-PIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKIS

Query:  RDENKVAHELATLTSSLKGFLVWNE
        R  NKVAH  A       G  VW +
Subjt:  RDENKVAHELATLTSSLKGFLVWNE
XP_021840770.1 uncharacterized protein LOC110780758, partial [Spinacia oleracea]7.5e-0428.91Show/hide
Query:  GVGWLVMNDSSHLILGGCKLFS--LRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKI
        G+G +V ++   ++  GC ++    RW  ++ EAK V+  L+  M +       + VE D + +++ L G + + S +SL +E+    S+ F    FC +
Subjt:  GVGWLVMNDSSHLILGGCKLFS--LRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKI

Query:  SRDENKVAHELATLTSSLKGFLVWNEHF
         R  N+VAH LA       G  VW + F
Subjt:  SRDENKVAHELATLTSSLKGFLVWNEHF
TrEMBL top hitse value%identityAlignment
A0A7C9A7V4 Uncharacterized protein5.0e-0632.79Show/hide
Query:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISR
        GVG +V + +  + +  C+ F   W ++  EA  V+  L+  +   +G +  +E+E+D  +V   L+G K  L+  S FI +AL+L T     +F  +SR
Subjt:  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISR

Query:  DENKVAHELATLTSSLKGFLVW
          N+VAHELA L   L+   +W
Subjt:  DENKVAHELATLTSSLKGFLVW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGCCTCTTGGTTGGAGAATCTCAAGCGAAGGAGGTGTCGGTTGGTTGGTGATGAATGATAGCAGTCACCTTATTCTAGGTGGGTGCAAATTGTTCTCTTTGAG
GTGGTTGATCAAGATTTTTGAAGCTAAAGTTGTGGTTGAAAGTTTGGAAAATGTCATGCATCTTGCAAAAGGTTCTAATCTCCCTATTGAAGTAGAGTCGGATTTAGTTG
AAGTGCTCAAGTTCTTAAGTGGCTCTAAGTCGAACCTTTCAGAAGTGAGTTTGTTCATTGAAGAAGCTCTTCATCTTTCTACTTCTTTTAGTGATGATAATTTTTGTAAA
ATTTCTAGAGATGAGAACAAAGTAGCTCATGAACTTGCAACTTTGACTTCTTCTTTGAAAGGTTTTTTGGTTTGGAACGAGCACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGCCTCTTGGTTGGAGAATCTCAAGCGAAGGAGGTGTCGGTTGGTTGGTGATGAATGATAGCAGTCACCTTATTCTAGGTGGGTGCAAATTGTTCTCTTTGAG
GTGGTTGATCAAGATTTTTGAAGCTAAAGTTGTGGTTGAAAGTTTGGAAAATGTCATGCATCTTGCAAAAGGTTCTAATCTCCCTATTGAAGTAGAGTCGGATTTAGTTG
AAGTGCTCAAGTTCTTAAGTGGCTCTAAGTCGAACCTTTCAGAAGTGAGTTTGTTCATTGAAGAAGCTCTTCATCTTTCTACTTCTTTTAGTGATGATAATTTTTGTAAA
ATTTCTAGAGATGAGAACAAAGTAGCTCATGAACTTGCAACTTTGACTTCTTCTTTGAAAGGTTTTTTGGTTTGGAACGAGCACTTTTGA
Protein sequenceShow/hide protein sequence
MSMPLGWRISSEGGVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCK
ISRDENKVAHELATLTSSLKGFLVWNEHF