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Tan0014167 (gene) of Snake gourd v1 genome

Gene IDTan0014167
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG07:31099298..31101282
RNA-Seq ExpressionTan0014167
SyntenyTan0014167
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-0961.11Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT
        LSTLSVL DN AVVSAG+APLRQRRW+ R      PT   F +F TF VEIELPVP+ LP   ESS     T
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-0456.9Show/hide
Query:  GLILLSTLSVLRDNSAVV------------SAGRAPLRQRRWDKRWMYWACPTQRRFV
        G I L TLSVLRDN+ VV            SAGR PL  RR  KRW+YWACPTQR  V
Subjt:  GLILLSTLSVLRDNSAVV------------SAGRAPLRQRRWDKRWMYWACPTQRRFV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.0e-0954.44Show/hide
Query:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT
        LSTLSVLRDN AVVSAG            RAPL  RR  KRW+YWACPT RR V    TF      VEIEL VP+ LP   ESS    R+
Subjt:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.0e-0954.44Show/hide
Query:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT
        LSTLSVLRDN AVVSAG            RAPL  RR  KRW+YWACPT RR V    TF      VEIEL VP+ LP   ESS    R+
Subjt:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-0961.11Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT
        LSTLSVL DN AVVSAG+APLRQRRW+ R      PT   F +F TF VEIELPVP+ LP   ESS     T
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.2e-0961.11Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT
        LSTLSVL DN AVVSAG+APLRQRRW+ R      PT   F +F TF VEIELPVP+ LP   ESS     T
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT

A0A5A7TCY8 DNA/RNA polymerases superfamily protein1.4e-0456.9Show/hide
Query:  GLILLSTLSVLRDNSAVV------------SAGRAPLRQRRWDKRWMYWACPTQRRFV
        G I L TLSVLRDN+ VV            SAGR PL  RR  KRW+YWACPTQR  V
Subjt:  GLILLSTLSVLRDNSAVV------------SAGRAPLRQRRWDKRWMYWACPTQRRFV

A0A5A7VGQ5 Uncharacterized protein1.5e-0954.44Show/hide
Query:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT
        LSTLSVLRDN AVVSAG            RAPL  RR  KRW+YWACPT RR V    TF      VEIEL VP+ LP   ESS    R+
Subjt:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT

A0A5D3BG85 Uncharacterized protein1.5e-0954.44Show/hide
Query:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT
        LSTLSVLRDN AVVSAG            RAPL  RR  KRW+YWACPT RR V    TF      VEIEL VP+ LP   ESS    R+
Subjt:  LSTLSVLRDNSAVVSAG------------RAPLRQRRWDKRWMYWACPTQRRFVF--PTFQ-----VEIELPVPENLPYKNESSLPRQRT

A0A5D3BTP3 Reverse transcriptase3.2e-0961.11Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT
        LSTLSVL DN AVVSAG+APLRQRRW+ R      PT   F +F TF VEIELPVP+ LP   ESS     T
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRF-VFPTFQVEIELPVPENLPYKNESSLPRQRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGTTGTACTGGTTTGTAGAGCTAGAATCAGAAGCTCTAATAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGG
GCGGGCCCCACTACGACAAAGACGATGGGATAAACGTTGGATGTACTGGGCGTGCCCTACACAACGTAGATTTGTTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGG
TGCCTGAAAACCTGCCATACAAAAACGAGAGCTCTCTTCCTCGCCAAAGAACGCCCCTCAATGCTTCAAATAGAATGGATGTGATGGTGTCTCCTCTTCCACCAAAAAGT
GATGCCCTATATTCAAAATTACAAAAGTACCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGTTGTACTGGTTTGTAGAGCTAGAATCAGAAGCTCTAATAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGG
GCGGGCCCCACTACGACAAAGACGATGGGATAAACGTTGGATGTACTGGGCGTGCCCTACACAACGTAGATTTGTTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGG
TGCCTGAAAACCTGCCATACAAAAACGAGAGCTCTCTTCCTCGCCAAAGAACGCCCCTCAATGCTTCAAATAGAATGGATGTGATGGTGTCTCCTCTTCCACCAAAAAGT
GATGCCCTATATTCAAAATTACAAAAGTACCCTTAA
Protein sequenceShow/hide protein sequence
MFLLYWFVELESEALIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWDKRWMYWACPTQRRFVFPTFQVEIELPVPENLPYKNESSLPRQRTPLNASNRMDVMVSPLPPKS
DALYSKLQKYP