CuGenDBv2

Gene ID	Tan0014237
Organism	Trichosanthes anguina (Snake gourd v1)
Description	High mobility group B protein 6
Genome location	LG03:62569751..62570732
RNA-Seq Expression	Tan0014237
Synteny	Tan0014237
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]

1.2e-82

85.43

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL +P+D+PLKSGRRPLQPKNSL NPVP+ AKI+KSKPE I+ISLSGDA+KEN PP        ATT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]

4.4e-82

85.43

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL  P+DLPLKSGRRPLQPKNSL NPVP+ AKI+KSKPE I+ISLSGDA+KEN PP         TT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]

1.7e-81

84.92

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL +P+D+PLKSGRRPLQPKNSL N VP+ AKI+KSKPE I+ISLSGDA+KEN PP        ATT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]

3.1e-80

83.42

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQALH PLATP DLPLKSGRRPLQPKNSL NPVPA AK++KSKPERI+ISL  DA+KEN PPIHA A +      +ESCD SLADELNAVKRKLERLRL+
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
         ERTE+ML+ERDM+ ELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]

6.5e-86

88.44

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Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPLATPQDLPLKSGRRPLQPKNSL N  P+ AK +KSKPERI+ISLSGDA+KEN PPIH  ATAT TT  IESCDSSLADELNAVKRKLERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTE+MLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDS+ FVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L063 Uncharacterized protein

2.1e-82

85.43

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL  P+DLPLKSGRRPLQPKNSL NPVP+ AKI+KSKPE I+ISLSGDA+KEN PP         TT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

A0A1S3CJ78 high mobility group B protein 6

8.1e-82

84.92

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL +P+D+PLKSGRRPLQPKNSL N VP+ AKI+KSKPE I+ISLSGDA+KEN PP        ATT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

A0A5A7SJQ2 High mobility group B protein 6

5.6e-83

85.43

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL +P+D+PLKSGRRPLQPKNSL NPVP+ AKI+KSKPE I+ISLSGDA+KEN PP        ATT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

A0A5D3CEI7 High mobility group B protein 6

8.1e-82

84.92

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQ LHHPL +P+D+PLKSGRRPLQPKNSL N VP+ AKI+KSKPE I+ISLSGDA+KEN PP        ATT  IESCD SLADELNAVKRK+ERLRLD
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
        GERTEKMLRERD++ ELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

A0A6J1ISM0 high mobility group B protein 13-like

1.5e-80

83.42

Show/hide

Query:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD
        MQALH PLATP DLPLKSGRRPLQPKNSL NPVPA AK++KSKPERI+ISL  DA+KEN PPIHA A +      +ESCD SLADELNAVKRKLERLRL+
Subjt:  MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLD

Query:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF
         ERTE+ML+ERDM+ ELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEES+GENSSLDSSEFVTGF
Subjt:  GERTEKMLRERDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G01910.1 unknown protein

9.3e-22

41.92

Show/hide

Query:  SGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLDGERTEKMLRERDMMFEL
        SGR+ LQP+N    P   A  +     E+++ +L+ +                       S D+SLA+EL+A K+KLERLR D E TEK+L+ERD   +L
Subjt:  SGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLDGERTEKMLRERDMMFEL

Query:  RMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESI
         M  LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F   E  D E S+
Subjt:  RMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESI

AT5G01910.2 unknown protein

3.5e-21

43.92

Show/hide

Query:  SGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLDGERTEKMLRERDMMFEL
        SGR+ LQP+N    P   A  +     E+++ +L+ +                       S D+SLA+EL+A K+KLERLR D E TEK+L+ERD   +L
Subjt:  SGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLDGERTEKMLRERDMMFEL

Query:  RMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
         M  LLQR + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  RMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGGCTCTTCACCATCCCTTAGCCACGCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGGCCACTCCAACCGAAGAATTCCCTTTCAAATCCTGTACCTGCCGCCGC
CAAAATCGTCAAATCCAAGCCGGAACGGATCGAGATCTCGCTCTCTGGCGACGCCGATAAGGAGAACCAACCGCCGATTCACGCGACGGCGACGGCGACGGCGACGACGA
CGAGGATCGAGTCATGTGATTCGTCACTGGCGGATGAACTCAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAG
AGGGATATGATGTTTGAGTTGCGGATGAAGGAGCTTTTGCAGAGAAGTCAGGAGCAGAGGGATCTGGAGATGGAGGTCGATAGGTTATTTCGATTGAAGGAACTCAGATC
GTACTGTATGAGGATTTCTCCAATTCGGAGTCTCAGAGAGAAGGAGCGAGAAAAGATATTCACCGACGCACAATTTCCGGAATTTGAAATCGGCGACGGAGAAGAATCGA
TCGGCGAGAATTCATCGTTGGATTCTTCTGAATTCGTCACAGGTTTTTGA

mRNA sequence

Show/hide mRNA sequence

GAAAAAGCCCTCTCTCTCTCTCCCACTCTTCTCTTTTTCTATGATTCCATTTCTCTTCCTCACCAATTCTCCATCTCCACCGATATGCAGGCTCTTCACCATCCCTTAGC
CACGCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGGCCACTCCAACCGAAGAATTCCCTTTCAAATCCTGTACCTGCCGCCGCCAAAATCGTCAAATCCAAGCCGGAAC
GGATCGAGATCTCGCTCTCTGGCGACGCCGATAAGGAGAACCAACCGCCGATTCACGCGACGGCGACGGCGACGGCGACGACGACGAGGATCGAGTCATGTGATTCGTCA
CTGGCGGATGAACTCAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATATGATGTTTGAGTTGCGGAT
GAAGGAGCTTTTGCAGAGAAGTCAGGAGCAGAGGGATCTGGAGATGGAGGTCGATAGGTTATTTCGATTGAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCAATTC
GGAGTCTCAGAGAGAAGGAGCGAGAAAAGATATTCACCGACGCACAATTTCCGGAATTTGAAATCGGCGACGGAGAAGAATCGATCGGCGAGAATTCATCGTTGGATTCT
TCTGAATTCGTCACAGGTTTTTGAAATCGTCTCTGTTTTGTTCGCCGCTTTTGATTTTCCCCAATTTTCCAACTACATCTCCTTCTGTTACTTCATCTTCTTTGGATTTC
TTCTGAAAGTGGCA

Protein sequence

Show/hide protein sequence

MQALHHPLATPQDLPLKSGRRPLQPKNSLSNPVPAAAKIVKSKPERIEISLSGDADKENQPPIHATATATATTTRIESCDSSLADELNAVKRKLERLRLDGERTEKMLRE
RDMMFELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESIGENSSLDSSEFVTGF

Tan0014237 (gene) of Snake gourd v1 genome