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Tan0014247 (gene) of Snake gourd v1 genome

Gene IDTan0014247
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
Genome locationLG08:55241147..55242532
RNA-Seq ExpressionTan0014247
SyntenyTan0014247
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.6e-0537.07Show/hide
Query:  GKPLLGGCKFISYNWPVKFLEAYAIQKGLKEVIAWGKNHAPHLIVETDSLEVISLLNGVTTDISEISFVID---------DILMSAKEFREENKATHSLV
        G  +L G +F+     VK LEA AI +GL+ +   G     H  +ETDS EV SLLN    D+++  +V++         +IL  AK  RE N   HSL 
Subjt:  GKPLLGGCKFISYNWPVKFLEAYAIQKGLKEVIAWGKNHAPHLIVETDSLEVISLLNGVTTDISEISFVID---------DILMSAKEFREENKATHSLV

Query:  ALASSFGDSWFWKDDF
          AS   +S  W D F
Subjt:  ALASSFGDSWFWKDDF
TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-0537.07Show/hide
Query:  GKPLLGGCKFISYNWPVKFLEAYAIQKGLKEVIAWGKNHAPHLIVETDSLEVISLLNGVTTDISEISFVID---------DILMSAKEFREENKATHSLV
        G  +L G +F+     VK LEA AI +GL+ +   G     H  +ETDS EV SLLN    D+++  +V++         +IL  AK  RE N   HSL 
Subjt:  GKPLLGGCKFISYNWPVKFLEAYAIQKGLKEVIAWGKNHAPHLIVETDSLEVISLLNGVTTDISEISFVID---------DILMSAKEFREENKATHSLV

Query:  ALASSFGDSWFWKDDF
          AS   +S  W D F
Subjt:  ALASSFGDSWFWKDDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACAACCACCCACTTATTATGGGAATGGACGGTGGAAGCCTTGAGATTATTGGGAATGCTCAAAGGGAAACCACTTTTGGGTGGTTGCAAGTTCATCTCTTATAA
TTGGCCTGTGAAGTTTCTTGAAGCGTATGCTATTCAGAAAGGCCTAAAGGAAGTCATTGCCTGGGGGAAGAATCATGCCCCACATCTGATCGTGGAAACAGATTCGTTGG
AAGTTATTTCGCTTTTGAATGGAGTTACCACTGATATTTCTGAAATTTCTTTTGTTATTGATGATATCCTTATGTCTGCTAAGGAATTTAGGGAGGAGAACAAAGCAACT
CACTCACTAGTAGCTTTGGCATCCTCTTTTGGAGATTCTTGGTTCTGGAAAGATGACTTTTCGGAGAATGTTCTTCCTTTGTCTTTGAGATGGGAACAGAAAATTTTGAG
GGCAGGCGCAGGGCCAGTATGGAATAGCCCAAGGAAATTCCATCGGCAAAGCAAAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACAACCACCCACTTATTATGGGAATGGACGGTGGAAGCCTTGAGATTATTGGGAATGCTCAAAGGGAAACCACTTTTGGGTGGTTGCAAGTTCATCTCTTATAA
TTGGCCTGTGAAGTTTCTTGAAGCGTATGCTATTCAGAAAGGCCTAAAGGAAGTCATTGCCTGGGGGAAGAATCATGCCCCACATCTGATCGTGGAAACAGATTCGTTGG
AAGTTATTTCGCTTTTGAATGGAGTTACCACTGATATTTCTGAAATTTCTTTTGTTATTGATGATATCCTTATGTCTGCTAAGGAATTTAGGGAGGAGAACAAAGCAACT
CACTCACTAGTAGCTTTGGCATCCTCTTTTGGAGATTCTTGGTTCTGGAAAGATGACTTTTCGGAGAATGTTCTTCCTTTGTCTTTGAGATGGGAACAGAAAATTTTGAG
GGCAGGCGCAGGGCCAGTATGGAATAGCCCAAGGAAATTCCATCGGCAAAGCAAAGGCTGA
Protein sequenceShow/hide protein sequence
METTTHLLWEWTVEALRLLGMLKGKPLLGGCKFISYNWPVKFLEAYAIQKGLKEVIAWGKNHAPHLIVETDSLEVISLLNGVTTDISEISFVIDDILMSAKEFREENKAT
HSLVALASSFGDSWFWKDDFSENVLPLSLRWEQKILRAGAGPVWNSPRKFHRQSKG