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Tan0014262 (gene) of Snake gourd v1 genome

Gene IDTan0014262
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG01:30910799..30913725
RNA-Seq ExpressionTan0014262
SyntenyTan0014262
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607244.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2860.91Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC
        LYLI      K+R  NES++   A G LP V    IV+IEASVF YRE A+GG +  +CAICL  F++GQKCRMM KCGH+FH  CIDRW K E+HCPLC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC

Query:  RSCICIVVHP
        RSC+C VVHP
Subjt:  RSCICIVVHP

XP_004151032.1 RING-H2 finger protein ATL66 [Cucumis sativus]9.5e-2955.75Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGE-LPAVGEREIVQIEASVFRYRELANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHC
        +Y ++F  Y+KT N NESE D     + LP   EREIVQIE  VF Y   A G +N+D  +C ICL++F++GQKC+ MKKCGH+FH SCIDRW + E  C
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGE-LPAVGEREIVQIEASVFRYRELANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHC

Query:  PLCRSCICIVVHP
        PLCRSC+C+VV+P
Subjt:  PLCRSCICIVVHP

XP_008457571.1 PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]8.0e-2854.84Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC
        +Y I+F LY+KT N N+ ++D +  G   ELPA  ER      EIVQIEA VF YRE     N  D++D  +C ICL++F++ QKCR MKKCGH+FHRSC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC

Query:  IDRWFKAEHHCPLCRSCICIVVHP
        IDRW K E  CPLCR+C+C+VV P
Subjt:  IDRWFKAEHHCPLCRSCICIVVHP

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]5.0e-3060.91Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC
        LYLI    +      +E E+ +  AG LP V E EIV+IEASVF YRE A+GG ++D+CAICL EF++GQKCR M KCGH+FHR CIDRW K + HCPLC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC

Query:  RSCICIVVHP
        RSC+C+VVHP
Subjt:  RSCICIVVHP

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]7.2e-2959.09Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC
        LYLI    +      +E E+ +  AG LP V E EIV+IEASVF Y+E A+GG ++D+CAICL EF++ QKCR M KCGH+FHR CIDRW K + HCPLC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC

Query:  RSCICIVVHP
        RSC+C+VVHP
Subjt:  RSCICIVVHP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein4.6e-2955.75Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGE-LPAVGEREIVQIEASVFRYRELANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHC
        +Y ++F  Y+KT N NESE D     + LP   EREIVQIE  VF Y   A G +N+D  +C ICL++F++GQKC+ MKKCGH+FH SCIDRW + E  C
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGE-LPAVGEREIVQIEASVFRYRELANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHC

Query:  PLCRSCICIVVHP
        PLCRSC+C+VV+P
Subjt:  PLCRSCICIVVHP

A0A1S3C6H7 RING-H2 finger protein ATL66-like3.9e-2854.84Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC
        +Y I+F LY+KT N N+ ++D +  G   ELPA  ER      EIVQIEA VF YRE     N  D++D  +C ICL++F++ QKCR MKKCGH+FHRSC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC

Query:  IDRWFKAEHHCPLCRSCICIVVHP
        IDRW K E  CPLCR+C+C+VV P
Subjt:  IDRWFKAEHHCPLCRSCICIVVHP

A0A5A7VPW6 RING-H2 finger protein ATL66-like5.1e-2854.4Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND---KCAICLSEFKEGQKCRMMKKCGHVFHRS
        +Y I+F LY+KT N N+ ++D +  G   ELPA  ER      EIVQIEA VF YRE     N  D++D   +C ICL++F++ QKCR MKKCGH+FHRS
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND---KCAICLSEFKEGQKCRMMKKCGHVFHRS

Query:  CIDRWFKAEHHCPLCRSCICIVVHP
        CIDRW K E  CPLCR+C+C+VV P
Subjt:  CIDRWFKAEHHCPLCRSCICIVVHP

A0A5D3BGV5 RING-H2 finger protein ATL66-like3.9e-2854.84Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC
        +Y I+F LY+KT N N+ ++D +  G   ELPA  ER      EIVQIEA VF YRE     N  D++D  +C ICL++F++ QKCR MKKCGH+FHRSC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAG---ELPAVGER------EIVQIEASVFRYREL---ANGGDNND--KCAICLSEFKEGQKCRMMKKCGHVFHRSC

Query:  IDRWFKAEHHCPLCRSCICIVVHP
        IDRW K E  CPLCR+C+C+VV P
Subjt:  IDRWFKAEHHCPLCRSCICIVVHP

A0A6J1KAT3 RING-type E3 ubiquitin transferase2.4e-3060.91Show/hide
Query:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC
        LYLI    +      +E E+ +  AG LP V E EIV+IEASVF YRE A+GG ++D+CAICL EF++GQKCR M KCGH+FHR CIDRW K + HCPLC
Subjt:  LYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLC

Query:  RSCICIVVHP
        RSC+C+VVHP
Subjt:  RSCICIVVHP

SwissProt top hitse value%identityAlignment
P0C041 Putative RING-H2 finger protein ATL533.2e-1137.08Show/hide
Query:  EADNAAAGELPAVGEREIVQIEASVFRYRELANGGD-NNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICI
        + D+  A E    G  + +  +   F+ ++  NG   N   C+ICL EF E +  R++ KC H FH  CIDRW K+  +CPLCR+ I +
Subjt:  EADNAAAGELPAVGEREIVQIEASVFRYRELANGGD-NNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICI

Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.9e-1137.97Show/hide
Query:  PAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIV
        P  G  E +  + +V +YR   +G  +   C++CL EF +G+  R++ +C H FH+ CID W K+  +CPLCR+ I  V
Subjt:  PAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIV

Q9LF64 RING-H2 finger protein ATL521.4e-1140.58Show/hide
Query:  SVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIVVHP
        +V++Y+   +G  +   C++CLSEF+E +  R++ KC H FH  CID W K+  +CPLCR+ +  V +P
Subjt:  SVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIVVHP

Q9LZJ6 RING-H2 finger protein ATL53.2e-1154.35Show/hide
Query:  DKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS
        ++C++CLSEF+E  + R++ KCGHVFH  CID WF++   CPLCR+
Subjt:  DKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS

Q9SRQ8 RING-H2 finger protein ATL513.8e-1237.36Show/hide
Query:  NVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCI
        N N +   N   G     G  E +    +V++YR++    +++D C++CLSEF+E +  R++ KC H FH  CID W K+  +CPLCR+ I
Subjt:  NVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCI

Arabidopsis top hitse value%identityAlignment
AT2G27940.1 RING/U-box superfamily protein2.9e-1246.67Show/hide
Query:  VFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS
        V+RY + A     N+ C ICLS+F+EG+  +++  CGHVFH  C+D W  +   CPLCRS
Subjt:  VFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS

AT3G03550.1 RING/U-box superfamily protein2.7e-1337.36Show/hide
Query:  NVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCI
        N N +   N   G     G  E +    +V++YR++    +++D C++CLSEF+E +  R++ KC H FH  CID W K+  +CPLCR+ I
Subjt:  NVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCI

AT3G62690.1 AtL52.3e-1254.35Show/hide
Query:  DKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS
        ++C++CLSEF+E  + R++ KCGHVFH  CID WF++   CPLCR+
Subjt:  DKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRS

AT4G17905.1 RING/U-box superfamily protein2.3e-1237.08Show/hide
Query:  EADNAAAGELPAVGEREIVQIEASVFRYRELANGGD-NNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICI
        + D+  A E    G  + +  +   F+ ++  NG   N   C+ICL EF E +  R++ KC H FH  CIDRW K+  +CPLCR+ I +
Subjt:  EADNAAAGELPAVGEREIVQIEASVFRYRELANGGD-NNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICI

AT5G17600.1 RING/U-box superfamily protein1.0e-1240.58Show/hide
Query:  SVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIVVHP
        +V++Y+   +G  +   C++CLSEF+E +  R++ KC H FH  CID W K+  +CPLCR+ +  V +P
Subjt:  SVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCICIVVHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAAAGCCATTTGTACCTCATCGCCTTCGGTTTATACTACAAAACCAGAAATGTTAACGAATCAGAAGCCGACAATGCGGCGGCCGGAGAATTGCCGGCGGTTGG
AGAGCGGGAGATTGTACAGATTGAGGCCTCGGTTTTCAGATACAGGGAATTAGCTAATGGAGGTGACAACAACGATAAATGCGCAATTTGCCTGAGCGAGTTTAAAGAAG
GTCAAAAGTGTCGAATGATGAAAAAGTGTGGCCATGTATTTCACCGGAGTTGCATTGACCGGTGGTTCAAGGCGGAGCACCACTGCCCCCTTTGCCGGAGCTGCATTTGC
ATCGTGGTTCATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAAAGCCATTTGTACCTCATCGCCTTCGGTTTATACTACAAAACCAGAAATGTTAACGAATCAGAAGCCGACAATGCGGCGGCCGGAGAATTGCCGGCGGTTGG
AGAGCGGGAGATTGTACAGATTGAGGCCTCGGTTTTCAGATACAGGGAATTAGCTAATGGAGGTGACAACAACGATAAATGCGCAATTTGCCTGAGCGAGTTTAAAGAAG
GTCAAAAGTGTCGAATGATGAAAAAGTGTGGCCATGTATTTCACCGGAGTTGCATTGACCGGTGGTTCAAGGCGGAGCACCACTGCCCCCTTTGCCGGAGCTGCATTTGC
ATCGTGGTTCATCCATGA
Protein sequenceShow/hide protein sequence
MTKSHLYLIAFGLYYKTRNVNESEADNAAAGELPAVGEREIVQIEASVFRYRELANGGDNNDKCAICLSEFKEGQKCRMMKKCGHVFHRSCIDRWFKAEHHCPLCRSCIC
IVVHP