CuGenDBv2

Gene ID	Tan0014308
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	LG06:69708287..69708625
RNA-Seq Expression	Tan0014308
Synteny	Tan0014308
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7013721.1 hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-16

49.11

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S+      FVA   +   FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          RM+L+FESS+
Subjt:  IDRMILRFESSS

KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.1e-17

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLV+L+   PLL+ATSLLT I++  DV+F + MLS+I       + SP FVA L +    F  YSVD  + S++SL SFH+A+L G +FSS+SIH+LE 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          +MILR+E+ S
Subjt:  IDRMILRFESSS

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]

2.1e-17

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRLE   PL++ATSLL  +A+  DVKF   ML II       N SP FVA L L +  F  +SVD N  S++SL  FH+A+L G +FSS++IH+L+ 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
         ++M+LRFE+ S
Subjt:  IDRMILRFESSS

XP_022958857.1 uncharacterized protein LOC111460011 [Cucurbita moschata]

3.1e-16

49.11

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S       FVA   +   FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          RM+L+FESS+
Subjt:  IDRMILRFESSS

XP_023006010.1 uncharacterized protein LOC111498887 [Cucurbita maxima]

4.0e-16

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL H  PL  ATSLL  I+   D+KF S+  S+I    S+      FVA   +   FFA YSVDRNH SR+SL SF++A+  G  FSS++IH  E 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          RM+L+FESS+
Subjt:  IDRMILRFESSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C8J1 uncharacterized protein LOC103498010

1.0e-17

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRLE   PL++ATSLL  +A+  DVKF   ML II       N SP FVA L L +  F  +SVD N  S++SL  FH+A+L G +FSS++IH+L+ 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
         ++M+LRFE+ S
Subjt:  IDRMILRFESSS

A0A1S4E4N8 uncharacterized protein LOC103502263

5.7e-16

50.89

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL+   PL +ATS L  IA   D+KF     SII       N SP FVA L +    F  Y VD +H SRISL SFH+ALL G    S++IH+L  
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
        I ++ILRFESSS
Subjt:  IDRMILRFESSS

A0A5D3DZC5 Uncharacterized protein

5.7e-16

50.89

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL+   PL +ATS L  IA   D+KF     SII       N SP FVA L +    F  Y VD +H SRISL SFH+ALL G    S++IH+L  
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
        I ++ILRFESSS
Subjt:  IDRMILRFESSS

A0A6J1H2Z8 uncharacterized protein LOC111460011

1.5e-16

49.11

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S       FVA   +   FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          RM+L+FESS+
Subjt:  IDRMILRFESSS

A0A6J1KZ05 uncharacterized protein LOC111498887

1.9e-16

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Query:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI
        MFLVRL H  PL  ATSLL  I+   D+KF S+  S+I    S+      FVA   +   FFA YSVDRNH SR+SL SF++A+  G  FSS++IH  E 
Subjt:  MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEI

Query:  IDRMILRFESSS
          RM+L+FESS+
Subjt:  IDRMILRFESSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTCTTGGTCAGGCTTGAGCATATTGCTCCTCTTTTGAATGCAACCTCCCTACTCACTCATATTGCTGAAGTAGTCGACGTGAAATTCTTGTCAACGATGCTCTCGAT
AATCGGTCGATCGGAGTCGCAATTCAACCATTCCCCTTGCTTCGTCGCAATGCTGCATTTGCCAAAGCCATTTTTCGCCCGCTATTCGGTCGATCGGAATCACATTTCAA
GGATTTCCCTTCACTCCTTTCACAATGCTTTGCTTCATGGCCAAACTTTTTCTTCACTCAGTATCCATATTCTCGAAATCATAGATCGCATGATCCTAAGATTCGAGTCT
TCAAGTTAG

mRNA sequence

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Protein sequence

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MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFES
SS

Tan0014308 (gene) of Snake gourd v1 genome