; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014346 (gene) of Snake gourd v1 genome

Gene IDTan0014346
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG09:10375555..10376358
RNA-Seq ExpressionTan0014346
SyntenyTan0014346
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-6853.36Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKK  S  S ASN Y GP+TRSRSKG+    DQ  + +A  ++K L E+ KA +VIK+NPL+D S  + +  K+  + D+MSVMM D+ P+ +M E+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN
        RKIN LMKAVEE+D EI  L+                                             Q+Q+MI NSIRAQYGGP Q   MYS+ YTKRIDN
Subjt:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN

Query:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        LRMP+GYQPPKFQQF+GKGNPKQHIAHF ETC+NAG+RGD LV+QFV +LKGN+F+WYTDLEPE+IDS
Subjt:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

TYK22679.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-6858.9Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKKV S    A + Y  P+TRSRSKG+    DQ  + +A  ++K L E+ KA +VIK+NPL+D S    N  K   + ++MSVMM D+  + +MTE+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMKAVEEKDLEIAYLK------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETC
        RKIN LMK VEE+D EI  L+             Q+Q+MI+NSIR QYGGP Q   MYS+PYTKR DNLR+P+GYQPPKFQQFDGKGNPKQHIAHFVETC
Subjt:  RKINLLMKAVEEKDLEIAYLK------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETC

Query:  KNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        +NAG+RGD LV+QFV +LKGN+F+WYTDLEPE+IDS
Subjt:  KNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.0e-6754.65Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV
        M SKK  S  SAAS+ Y GP+TRSRSKG+    DQ   A+A  ++K L E+ KA +VIK+NPL+ D  + +   LKE  + D+MSVMM DV  + +M E+
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV

Query:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID
        ERKINLLMK V+E+D EIA LK                                             Q+Q+MI NSIRAQYGGP+Q   MYS+PYTKRID
Subjt:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID

Query:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        NLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETC+NAG+RGD LV+QFV +LKGN+F+WYTDLEPE I+S
Subjt:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.7e-6754.28Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV
        M SKK  S  SAAS+ Y GP+TRSRSKG+    DQ   A+A  ++K L E+ KA +VIK+NPL+ D  + +   LKE  + D+MSVMM DV  + +M E+
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV

Query:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID
        ERKINLLMK V+E+D EIA LK                                             Q+Q+MI +SIRAQYGGP+Q   MYS+PYTKRID
Subjt:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID

Query:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        NLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETC+NAG+RGD LV+QFV +LKGN+F+WYTDLEPE I+S
Subjt:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.0e-6754.65Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV
        M SKK  S  SAAS+ Y GP+TRSRSKG+    DQ   A+A  ++K L E+ KA +VIK+NPL+ D  + +   LKE  + D+MSVMM DV  + +M E+
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLF-DQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEV

Query:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID
        ERKINLLMK V+E+D EIA LK                                             Q+Q+MI NSIRAQYGGP+Q   MYS+PYTKRID
Subjt:  ERKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRID

Query:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        NLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETC+NAG+RGD LV+QFV +LKGN+F+WYTDLEPE I+S
Subjt:  NLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

TrEMBL top hitse value%identityAlignment
A0A5A7SP32 Ty3-gypsy retrotransposon protein2.9e-6457.71Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKK  S    ASN Y G +TRSRSKG+    DQ  + +A  ++K L E+ KA++V K+NPL+D S  T +  K+  +  +M VMM D+  + +M E+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMK--AVEEKDLEIAYLK-SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDL
        RK+N LMK    +++ + +A L   Q+Q+MI NSIRAQYGGP Q   MYS+PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQHIAHFVETC+NAG+RG+ 
Subjt:  RKINLLMK--AVEEKDLEIAYLK-SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDL

Query:  LVKQFVHTLKGNSFDWYTDLEPEIIDS
        LV+QFV +LK N+F+WYTDLE E+IDS
Subjt:  LVKQFVHTLKGNSFDWYTDLEPEIIDS

A0A5A7TUS2 Ty3-gypsy retrotransposon protein5.0e-6458.52Show/hide
Query:  STVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQD-----IMSVMMTDVDPDES-MTEVER
        +T    S+I   P TRSRS+ +++S+D  P  +A ++ + +++  K  +VIK+NP  D+     N L E  N++     IMSVM+TDVD  E  MTE+E+
Subjt:  STVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQD-----IMSVMMTDVDPDES-MTEVER

Query:  KINLLMKAVEEKDLEIAYLKSQI------QNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRG
        K+N+LMKAVEE+D EIA LK+QI      Q MI NSI+ QYGGP Q   +Y +PYTKRIDN+RMP GYQPPKFQQFDGK NPKQH+AHF+ETC+ AGTRG
Subjt:  KINLLMKAVEEKDLEIAYLKSQI------QNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRG

Query:  DLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        DLLVKQFV TLKGN+FDWYTDLEPE IDS
Subjt:  DLLVKQFVHTLKGNSFDWYTDLEPEIIDS

A0A5A7VCU1 Ty3-gypsy retrotransposon protein2.7e-6552.61Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKK  S  S AS+ Y GP+TR+RSKG+    DQ  D +   ++K L E+ KA +VIK+N L+D S    +  K+  + D+MSVMMTD+  +  M E+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN
        RKIN LMK VEE+D EI  L+                                             Q+QNMI NS RAQYGGP Q   MYS+ YTKRIDN
Subjt:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN

Query:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        LRMP+GYQPPKFQQFDGKGNPKQHIAHFVETCKNAG+R D LV+QFV +LKGN F+WYTDLEPE+IDS
Subjt:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.0e-6853.36Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKK  S  S ASN Y GP+TRSRSKG+    DQ  + +A  ++K L E+ KA +VIK+NPL+D S  + +  K+  + D+MSVMM D+ P+ +M E+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN
        RKIN LMKAVEE+D EI  L+                                             Q+Q+MI NSIRAQYGGP Q   MYS+ YTKRIDN
Subjt:  RKINLLMKAVEEKDLEIAYLK--------------------------------------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDN

Query:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        LRMP+GYQPPKFQQF+GKGNPKQHIAHF ETC+NAG+RGD LV+QFV +LKGN+F+WYTDLEPE+IDS
Subjt:  LRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

A0A5D3DHB7 Ty3-gypsy retrotransposon protein2.6e-6858.9Show/hide
Query:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE
        M SKKV S    A + Y  P+TRSRSKG+    DQ  + +A  ++K L E+ KA +VIK+NPL+D S    N  K   + ++MSVMM D+  + +MTE+E
Subjt:  MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVE

Query:  RKINLLMKAVEEKDLEIAYLK------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETC
        RKIN LMK VEE+D EI  L+             Q+Q+MI+NSIR QYGGP Q   MYS+PYTKR DNLR+P+GYQPPKFQQFDGKGNPKQHIAHFVETC
Subjt:  RKINLLMKAVEEKDLEIAYLK------------SQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETC

Query:  KNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS
        +NAG+RGD LV+QFV +LKGN+F+WYTDLEPE+IDS
Subjt:  KNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPEIIDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCAAAGAAAGTTACATCAACTGTTTCTGCTGCAAGTAACATCTACATGGGGCCGGTAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCAAACTCC
TGATGCAATGGCAAACCACCTCATCAAATTACTGAATGAAGCTTCCAAAGCTAAGGTTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTACCCCAAATCCAC
TGAAGGAGACGATGAATCAAGATATAATGTCAGTCATGATGACTGATGTAGACCCTGATGAAAGTATGACAGAAGTGGAAAGAAAAATCAATCTCTTGATGAAGGCGGTG
GAAGAAAAAGATCTTGAAATCGCCTACCTCAAAAGTCAAATTCAGAACATGATCATAAATTCTATCAGAGCTCAGTACGGCGGACCCACTCAAAATCCTCTCATGTACTC
CAGACCATACACCAAGAGGATTGATAACCTGAGGATGCCCATAGGCTACCAGCCTCCAAAATTTCAACAGTTTGACGGAAAGGGAAACCCAAAGCAACACATTGCACATT
TCGTTGAAACCTGCAAAAATGCCGGGACGCGTGGCGACCTCTTGGTAAAGCAATTCGTGCATACCTTGAAAGGAAATTCTTTTGACTGGTACACCGACTTAGAGCCAGAA
ATAATCGATAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATCAAAGAAAGTTACATCAACTGTTTCTGCTGCAAGTAACATCTACATGGGGCCGGTAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCAAACTCC
TGATGCAATGGCAAACCACCTCATCAAATTACTGAATGAAGCTTCCAAAGCTAAGGTTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTACCCCAAATCCAC
TGAAGGAGACGATGAATCAAGATATAATGTCAGTCATGATGACTGATGTAGACCCTGATGAAAGTATGACAGAAGTGGAAAGAAAAATCAATCTCTTGATGAAGGCGGTG
GAAGAAAAAGATCTTGAAATCGCCTACCTCAAAAGTCAAATTCAGAACATGATCATAAATTCTATCAGAGCTCAGTACGGCGGACCCACTCAAAATCCTCTCATGTACTC
CAGACCATACACCAAGAGGATTGATAACCTGAGGATGCCCATAGGCTACCAGCCTCCAAAATTTCAACAGTTTGACGGAAAGGGAAACCCAAAGCAACACATTGCACATT
TCGTTGAAACCTGCAAAAATGCCGGGACGCGTGGCGACCTCTTGGTAAAGCAATTCGTGCATACCTTGAAAGGAAATTCTTTTGACTGGTACACCGACTTAGAGCCAGAA
ATAATCGATAGTTAG
Protein sequenceShow/hide protein sequence
MQSKKVTSTVSAASNIYMGPVTRSRSKGVETSDDQTPDAMANHLIKLLNEASKAKVVIKDNPLFDQSAPTPNPLKETMNQDIMSVMMTDVDPDESMTEVERKINLLMKAV
EEKDLEIAYLKSQIQNMIINSIRAQYGGPTQNPLMYSRPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGTRGDLLVKQFVHTLKGNSFDWYTDLEPE
IIDS