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Tan0014433 (gene) of Snake gourd v1 genome

Gene IDTan0014433
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLysM domain-containing protein
Genome locationLG03:68298491..68299032
RNA-Seq ExpressionTan0014433
SyntenyTan0014433
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]1.6e-2381.01Show/hide
Query:  VVVLVLLSWWCL-WCCNCKSQELL-MNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHH
        VV LV+L   CL WC  CKS ELL  NC+EIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITP FHH
Subjt:  VVVLVLLSWWCL-WCCNCKSQELL-MNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHH

KAF8397851.1 hypothetical protein HHK36_016776 [Tetracentron sinense]1.8e-1965.88Show/hide
Query:  LSWWC---------LWCCNCKSQEL-------LMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        +SW+C         L CC+    EL       LMN  CDEIYVV EGETL TISEKCGDPFIVEENPHI+DPDDVFPGLVIKITP
Subjt:  LSWWC---------LWCCNCKSQEL-------LMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2975.82Show/hide
Query:  MGKR---KMENLVVVLVLLSWWCLWCCNCKSQELLMNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHHIL
        M KR   + E LV+VLV LSWWC+WCCN  SQE+LM CDEIYVVREGETLQ+ISEKCGDPFI E NPHIND DDVFPGLVIKITP  H  L
Subjt:  MGKR---KMENLVVVLVLLSWWCLWCCNCKSQELLMNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHHIL

XP_017976703.1 PREDICTED: uncharacterized protein LOC108662080 [Theobroma cacao]1.4e-1962.92Show/hide
Query:  LSWWC---------LWCCNCK-----------SQELLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        LSW+C         L CC               ++L+MN  CDEIYVVREGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITP
Subjt:  LSWWC---------LWCCNCK-----------SQELLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

XP_021289333.1 uncharacterized protein LOC110420373 [Herrania umbratica]6.3e-2064.04Show/hide
Query:  LSWWC---------LWCCNCKSQE-----------LLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        LSW+C         L CC    +E           L+MN  CDEIYVVREGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITP
Subjt:  LSWWC---------LWCCNCKSQE-----------LLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

TrEMBL top hitse value%identityAlignment
A0A1U8AYB4 uncharacterized protein LOC1046077162.0e-1965.48Show/hide
Query:  NLVVVLVLLSWWCLWCCNCKSQELLMN---------CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        +LV+V++LL    L CC+    E L+          CDEIYVV EGETL TISEKCGDPFIVEENPHI+DPDDVFPGLVIKITP
Subjt:  NLVVVLVLLSWWCLWCCNCKSQELLMN---------CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

A0A5A7P929 Peptidoglycan-binding LysM domain-containing protein3.4e-1988.68Show/hide
Query:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHHI
        CDEIYVV+EGETL TISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPN  +I
Subjt:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHHI

A0A5B7BQU9 LysM domain-containing protein (Fragment)1.2e-1960.92Show/hide
Query:  LSWWC---------LWCCNCKSQELLMN----------CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN
        +SW+C         L CC     EL++           CDEIYVVREGETL TISEKCGDP+IVEENPHI+DPDDVFPGLVIKITP+
Subjt:  LSWWC---------LWCCNCKSQELLMN----------CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN

A0A5E4F1E4 PREDICTED: GDSL3.4e-1959.38Show/hide
Query:  VVVLVLLSWWC---------LWCCNCKSQE--------------LLMNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        V V   +SW+C         L CC   S E              L M CDEIYVV EGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITP
Subjt:  VVVLVLLSWWC---------LWCCNCKSQE--------------LLMNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

A0A6J1AQQ1 uncharacterized protein LOC1104203733.0e-2064.04Show/hide
Query:  LSWWC---------LWCCNCKSQE-----------LLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        LSW+C         L CC    +E           L+MN  CDEIYVVREGETLQTISEKCGDP+IVEENPHI+DPDDVFPGLVIKITP
Subjt:  LSWWC---------LWCCNCKSQE-----------LLMN--CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.6e-1879.59Show/hide
Query:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN
        CDEIY V+EGETLQTISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP+
Subjt:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.4e-1775.51Show/hide
Query:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN
        C+E+YVV EG+TL +ISEKCGDPFIVE NPHI+DPDDVFPGL+IK+  N
Subjt:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPN

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein1.3e-1879.17Show/hide
Query:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        C+EIY+V EGETL TI +KCGDPFIVE NPHI+DPDDVFPGLV+KI P
Subjt:  CDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAGAAAGATGGAGAATTTGGTGGTGGTTTTGGTATTATTGAGCTGGTGGTGCTTATGGTGCTGCAACTGCAAGAGCCAAGAATTATTGATGAACTGTGATGA
AATATATGTAGTTCGTGAAGGAGAAACTTTGCAGACCATTAGTGAAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTC
CTGGTTTGGTCATCAAGATCACTCCTAATTTTCACCATATTCTCCATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATAACTTAAAGCAAAAAAAGGGAAGAAAAGGCAAGGTGAGAAATTGATTAGAAATCAAGAACAGCAATGGGGAAGAGAAAGATGGAGAATTTGGTGGTGGTTTTGGTATT
ATTGAGCTGGTGGTGCTTATGGTGCTGCAACTGCAAGAGCCAAGAATTATTGATGAACTGTGATGAAATATATGTAGTTCGTGAAGGAGAAACTTTGCAGACCATTAGTG
AAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTAATTTTCACCATATTCTC
CATCCTTAATTTTCATCTAACTTCAATTCTTCAATTTCTTTGAGGGTTTTGTTTCAATCCAATGTCTCATATTTCCCTGTGATGAATATTGGGTTTTTGCTTTTTGGTTT
TTTATATATAGTGGTTGCAATTTTGTCCATCTTCTTGTAAATGAGGTAAGAGAGCTTTATGTTCAACTGCATCTCTTAATTACTTTCTTATAAAGATATCTA
Protein sequenceShow/hide protein sequence
MGKRKMENLVVVLVLLSWWCLWCCNCKSQELLMNCDEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPNFHHILHP