CuGenDBv2

Gene ID	Tan0014437
Organism	Trichosanthes anguina (Snake gourd v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Genome location	LG04:82076532..82078926
RNA-Seq Expression	Tan0014437
Synteny	Tan0014437
Gene Ontology terms	NA
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD IPR044985 - Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008461873.1 PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo]

5.6e-113

91.7

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE G L+ T RNINSISSSFNK AP S TQTFKIKASSKRNDISLRRS KT RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVLVLSSNRANREIHLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKS
        SQPTV+YIGAQNAASIDKRW RLLELRKS
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKS

XP_011651803.2 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus]

3.5e-115

92.17

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+ TARNINSISS+FNKAAP S+TQTFKIKASSKRNDISLRRS KT RRLITIST+GSRWQGKWT DY+LSLQDLNLEDLVEDE+ NAHVFINL
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDG+INTSFTRKCC CSSPYCREINANFNVLVLSSNRANREIHLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE+CEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQPTV+YIGAQNAASIDKRWSRLLELRKSN
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

XP_022983270.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima]

9.5e-113

90.87

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Query:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+ A N+NSISSSFNK AAP  ATQTFKIKASSKRNDISLRRS K PRRLITIST+GS WQGKW+CDYLLSLQD NLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRA RE  LPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQP+V+YIGAQNAASIDKRWSRLLELRKS+
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

XP_031738565.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus]

2.9e-114

92.17

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+ TARNINSISSSFNKAAP  +TQTFKIKASSKRNDISL RS KT RRLITIST+GSRWQGKWTCDYLLSL+DLNLEDLVEDE++NAHVFINL
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDG+INTSFTRKCC CSSPYCREINANFNVLVLSSNRANREIHLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE+CEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQPTV+YIGAQNAASIDKRWSRLLELRKSN
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

XP_038906104.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida]

1.7e-114

92.61

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Query:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+TARNINSISSSFNK AAP  ATQTFKI ASSKRNDISLRRS KT RRLITISTSGSRWQGKWT DYLLSL+DLNLEDLVEDEH+NA VFINL
Subjt:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR NREIHLP+IGGDDPSVIYVKPGLEADLDS VRDTIRLTTSTKDTCSELCEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQPTV+YIGAQN ASIDKRWSRLLELRKSN
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9P4 Uncharacterized protein

1.2e-108

78.36

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRR--------------------------------------SGKTPRRLITISTS
        MAE GHL+ TARNINSISSSFNKAAP  +TQTFKIKASSKRNDISL +                                        KT RRLITIST+
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRR--------------------------------------SGKTPRRLITISTS

Query:  GSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDD
        GSRWQGKWTCDYLLSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTSFTRKCC CSSPYCREINANFNVLVLSSNRANREIHLP+IGGDD
Subjt:  GSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDD

Query:  PSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRKSN
        PSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE+CEKSQPTV+YIGAQNAASIDKRWSRLLELRKSN
Subjt:  PSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRKSN

A0A1S3CFK7 uncharacterized protein LOC103500366

2.7e-113

91.7

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE G L+ T RNINSISSSFNK AP S TQTFKIKASSKRNDISLRRS KT RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVLVLSSNRANREIHLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKS
        SQPTV+YIGAQNAASIDKRW RLLELRKS
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKS

A0A5D3C1F8 DUF177 domain-containing protein

2.7e-113

91.7

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Query:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE G L+ T RNINSISSSFNK AP S TQTFKIKASSKRNDISLRRS KT RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLL-TARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDG+INTSFTRKCCTCS PYCREI ANFNVLVLSSNRANREIHLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKS
        SQPTV+YIGAQNAASIDKRW RLLELRKS
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKS

A0A6J1F8T8 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2

1.2e-110

88.7

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Query:  MAEVGHLLTARNINSISSSFNKAAPNS-ATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+ A N+NSISSSFNKAA +  ATQ FKIKASSKRNDISLRRS K PRRLITIST+GS WQG+W+CDYLLSLQD NLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLLTARNINSISSSFNKAAPNS-ATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDGKINTSF RKCCTCSSPYCREINANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQP+V+YIGAQNAASIDKRWSRLLELRKS+
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

A0A6J1J5E3 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4

4.6e-113

90.87

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Query:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL
        MAE GHL+ A N+NSISSSFNK AAP  ATQTFKIKASSKRNDISLRRS K PRRLITIST+GS WQGKW+CDYLLSLQD NLEDLVEDEH+NAHVFINL
Subjt:  MAEVGHLLTARNINSISSSFNK-AAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINL

Query:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
        CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRA RE  LPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK
Subjt:  CIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEK

Query:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN
        SQP+V+YIGAQNAASIDKRWSRLLELRKS+
Subjt:  SQPTVEYIGAQNAASIDKRWSRLLELRKSN

SwissProt top hits

e value

%identity

Alignment

Q9C5M1 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic

2.6e-57

Show/hide

Query:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR
        S KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS G +VDG+I TS  RKC  CSS Y R I+ +F V +L S+R
Subjt:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR

Query:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK
         NR   LPEIGGDDPSVIYV+PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Subjt:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19800.1 Protein of unknown function (DUF177)

1.9e-58

Show/hide

Query:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR
        S KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS G +VDG+I TS  RKC  CSS Y R I+ +F V +L S+R
Subjt:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR

Query:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK
         NR   LPEIGGDDPSVIYV+PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Subjt:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK

AT3G19800.2 Protein of unknown function (DUF177)

1.9e-58

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Query:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR
        S KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS G +VDG+I TS  RKC  CSS Y R I+ +F V +L S+R
Subjt:  SGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNR

Query:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK
         NR   LPEIGGDDPSVIYV+PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Subjt:  ANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWSRLLELRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGAAGTTGGGCATCTTCTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCAAATTCTGCAACTCAAACATTCAAAATCAAAGCTTC
TTCAAAAAGAAATGACATCTCCTTGAGAAGAAGCGGAAAAACTCCACGGCGTCTGATAACGATATCGACATCAGGAAGCAGATGGCAGGGGAAATGGACCTGTGATTACT
TGCTTTCCCTGCAAGACCTCAACTTGGAAGACTTGGTAGAAGATGAACACAGAAATGCACATGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTTGGGTTCACC
GTGGATGGAAAGATCAACACATCGTTCACTCGGAAGTGCTGTACATGTTCTTCGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTTTGTCATCAAACAG
AGCCAACCGAGAGATTCATCTTCCTGAAATTGGAGGCGATGATCCATCAGTGATCTATGTTAAACCCGGACTTGAAGCTGATCTAGATTCACTAGTACGTGACACAATTA
GGCTGACCACCTCAACAAAGGATACTTGCTCAGAGTTGTGCGAGAAATCTCAACCCACAGTGGAATATATTGGGGCACAGAATGCTGCATCTATTGACAAAAGGTGGTCC
AGGCTTTTGGAGCTTAGAAAATCTAATGTATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAEVGHLLTARNINSISSSFNKAAPNSATQTFKIKASSKRNDISLRRSGKTPRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHRNAHVFINLCIEKHASFGFT
VDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVEYIGAQNAASIDKRWS
RLLELRKSNV

Tan0014437 (gene) of Snake gourd v1 genome