; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014478 (gene) of Snake gourd v1 genome

Gene IDTan0014478
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG09:22385119..22393203
RNA-Seq ExpressionTan0014478
SyntenyTan0014478
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]3.0e-1657.14Show/hide
Query:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASS
        + K L+IK W+KYNF HA IK +K+WFA+N YL+D+ ++KN EFLN KSKLL ALAQ TT+AD Q++L+   + +SS
Subjt:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASS

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.8e-1640.62Show/hide
Query:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV
        F LYFQ PWIFCWNFQ+ +   ++ + K L+IKWW+K+N+SH  + ++K WF  N +L+D++++++  FL +K+ +++ LA  +T+ +L  ++N V
Subjt:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]2.0e-2042.42Show/hide
Query:  PPRPSASLIRPTAV-TQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFHKQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYY
        PPRPSA+LIR + +  QMRP  S    SS+++ S+  TT+ + V P K                                        C+N    +Y  Y
Subjt:  PPRPSASLIRPTAV-TQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFHKQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYY

Query:  EQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEAD
        + ++K L+IKWW KYNF HA IK +K+WFADNGYL+D+ ++KN EFLN KSKLLAALAQ TT+AD
Subjt:  EQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEAD

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]3.0e-1635.81Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFH
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V QMR S S   PSS+++ S++PTT+ +AV P K+       K+      
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFH

Query:  KQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEA
                        YFQ P +            Y+ I+++                      +  NG L+D+ ++KNA+FLN K K LAAL Q T +A
Subjt:  KQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEA

Query:  DLQKILNQVTSIASS
        D Q++L+   + +SS
Subjt:  DLQKILNQVTSIASS

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.8e-1640.62Show/hide
Query:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV
        F LYFQ PWIFCWNFQ+ +   ++ + K L+IKWW+K+N+SH  + ++K WF  N +L+D++++++  FL +K+ +++ LA  +T+ +L  ++N V
Subjt:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV

TrEMBL top hitse value%identityAlignment
A0A5A7SWC0 Uncharacterized protein1.5e-1657.14Show/hide
Query:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASS
        + K L+IK W+KYNF HA IK +K+WFA+N YL+D+ ++KN EFLN KSKLL ALAQ TT+AD Q++L+   + +SS
Subjt:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASS

A0A5A7TBK1 Retrotransposable element Tf23.3e-1640.62Show/hide
Query:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV
        F LYFQ PWIFCWNFQ+ +   ++ + K L+IKWW+K+N+SH  + ++K WF  N +L+D++++++  FL +K+ +++ LA  +T+ +L  ++N V
Subjt:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV

A0A5A7UZX0 Polyprotein9.8e-2142.42Show/hide
Query:  PPRPSASLIRPTAV-TQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFHKQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYY
        PPRPSA+LIR + +  QMRP  S    SS+++ S+  TT+ + V P K                                        C+N    +Y  Y
Subjt:  PPRPSASLIRPTAV-TQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFHKQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYY

Query:  EQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEAD
        + ++K L+IKWW KYNF HA IK +K+WFADNGYL+D+ ++KN EFLN KSKLLAALAQ TT+AD
Subjt:  EQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEAD

A0A5D3BI61 Uncharacterized protein1.5e-1635.81Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFH
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V QMR S S   PSS+++ S++PTT+ +AV P K+       K+      
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFH

Query:  KQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEA
                        YFQ P +            Y+ I+++                      +  NG L+D+ ++KNA+FLN K K LAAL Q T +A
Subjt:  KQYTKMHSHSQCVFFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEA

Query:  DLQKILNQVTSIASS
        D Q++L+   + +SS
Subjt:  DLQKILNQVTSIASS

A0A5D3D2Q6 Retrotransposable element Tf23.3e-1640.62Show/hide
Query:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV
        F LYFQ PWIFCWNFQ+ +   ++ + K L+IKWW+K+N+SH  + ++K WF  N +L+D++++++  FL +K+ +++ LA  +T+ +L  ++N V
Subjt:  FFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTAAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCAAGGCCATCAGCCTCCCTCATACGGCCTACTGCCGTTACACAAATGAGACCTTCCGTCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGTCAATCCTCCCAAAAGGAAATCTTCCCACTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAA
TGCGTTTTTTTTTTATACTTTCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACATACACCTATTACGAACAAATCGTAAAAGTTTTACAAATCAAATGGTG
GGACAAGTACAACTTTTCTCATGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCGAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATT
CCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATTCGCCGACTTAATATGC
CTACCTTCTTGGGGAGAAGACCGACTAAGCAGCTGGGGACTTAGCCTAACAAGATGGAATTCACTCCTTCTCGCCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTAAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCAAGGCCATCAGCCTCCCTCATACGGCCTACTGCCGTTACACAAATGAGACCTTCCGTCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCGTCAATCCTCCCAAAAGGAAATCTTCCCACTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAA
TGCGTTTTTTTTTTATACTTTCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACATACACCTATTACGAACAAATCGTAAAAGTTTTACAAATCAAATGGTG
GGACAAGTACAACTTTTCTCATGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCGAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATT
CCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATTCGCCGACTTAATATGC
CTACCTTCTTGGGGAGAAGACCGACTAAGCAGCTGGGGACTTAGCCTAACAAGATGGAATTCACTCCTTCTCGCCTACTAG
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTAVTQMRPSVSPTTPSSSQQGSSIPTTFVEAVNPPKRKSSHFLFKNHSIIFHKQYTKMHSHSQ
CVFFLYFQTPWIFCWNFQINTYTYYEQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLEDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSFADLIC
LPSWGEDRLSSWGLSLTRWNSLLLAY