CuGenDBv2

Gene ID	Tan0014484
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome location	LG06:13283171..13284530
RNA-Seq Expression	Tan0014484
Synteny	Tan0014484
Gene Ontology terms	GO:0006386 - termination of RNA polymerase III transcription (biological process) GO:0001172 - transcription, RNA-templated (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006361 - transcription initiation from RNA polymerase I promoter (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0006363 - termination of RNA polymerase I transcription (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0001056 - RNA polymerase III activity (molecular function) GO:0001055 - RNA polymerase II activity (molecular function) GO:0001054 - RNA polymerase I activity (molecular function)
InterPro domains	IPR023580 - RNA polymerase subunit RPB10 IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site

Homology

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GenBank top hits

e value

%identity

Alignment

CDM84745.1 unnamed protein product [Triticum aestivum]

1.6e-19

67.57

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD LGLVRYCCR+M +THVD+I++LLNY  K L L Y+F
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF

KAF7031339.1 hypothetical protein CFC21_042683 [Triticum aestivum]

1.6e-19

67.57

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD LGLVRYCCR+M +THVD+I++LLNY  K L L Y+F
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF

PLY70860.1 hypothetical protein LSAT_9X15080 [Lactuca sativa]

1.9e-20

66.67

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFY
        MIIPVRCFTCGKVIG+KW  Y +LL++++ TE DALD LGLVRYCCR+M +THVD+I++LLNY     P FY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFY

QCE15947.1 DNA-directed RNA polymerases I [Vigna unguiculata]

3.3e-20

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDFF
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ +E DALD LGLVRYCCR+M +THVD+I++LLNY G    L+Y F+
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDFF

THU50869.1 hypothetical protein C4D60_Mb06t24900 [Musa balbisiana]

1.2e-19

68.12

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLP
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD LGLVRYCCR+M +THVD+I++LLNY  K  P
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLP

TrEMBL top hits

e value

%identity

Alignment

A0A077RWJ0 Uncharacterized protein

7.9e-20

67.57

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD LGLVRYCCR+M +THVD+I++LLNY  K L L Y+F
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF

A0A0R0L5R6 Uncharacterized protein

1.2e-20

63.51

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF
        MIIPVRCFTCGKVIG+KW  Y +LL++++ +E DALD LGLVRYCCR+M +THVD+I++LLNY   +  L+Y F
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDF

A0A2J6K708 Uncharacterized protein

9.3e-21

66.67

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFY
        MIIPVRCFTCGKVIG+KW  Y +LL++++ TE DALD LGLVRYCCR+M +THVD+I++LLNY     P FY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFY

A0A4D6NVW4 DNA-directed RNA polymerases I

1.6e-20

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDFF
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ +E DALD LGLVRYCCR+M +THVD+I++LLNY G    L+Y F+
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDFF

A0A4S8IR62 Uncharacterized protein

6.0e-20

68.12

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLP
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD LGLVRYCCR+M +THVD+I++LLNY  K  P
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLP

SwissProt top hits

e value

%identity

Alignment

P22139 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.0e-20

63.49

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MI+PVRCF+CGKV+GDKW+ Y NLL+ + L E  AL RLGL RYCCR+M +THVD+I++ L Y
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.6e-20

66.67

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MIIPVRCFTCGK++G+KW+ Y  LL+ E+ TE DALD LGL RYCCR+M + HVD+I++LLNY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.0e-20

69.84

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD L LVRYCCR+M +THVD+I++LLNY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.6e-20

66.67

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MIIPVRCFTCGK++G+KW+ Y  LL+ E+ TE DALD LGL RYCCR+M + HVD+I++LLNY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Q75BV8 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.2e-20

63.49

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MI+PVRCF+CGKV+GDKW+ Y N+L+ E L E  AL RLGL RYCCR+M +THVD+I++ L Y
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

5.4e-21

69.84

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MIIPVRCFTCGKVIG+KW  Y +LL+ ++ TE DALD L LVRYCCR+M +THVD+I++LLNY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

AT1G61700.1 RNA polymerases N / 8 kDa subunit

1.9e-21

68.25

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Query:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY
        MI+PVRCFTCGKVIG+KW  Y  LL+ ++  E DALD LGLVRYCCR+M +THVD+I++LLNY
Subjt:  MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNY

Sequences

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CDS sequence

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ATGATAATCCCAGTTCGTTGCTTTACCTGTGGCAAGGTTATCGGGGATAAATGGAAATGTTATAAAAATTTGCTTAAAAATGAACATCTTACCGAAAGTGATGCTTTGGA
TCGTCTAGGGTTGGTTCGATATTGTTGTAGGCAGATGTTCATTACTCATGTTGATATCATTAAGAGGCTTCTTAACTACGGGGGTAAGAATCTTCCACTCTTTTATGATT
TTTTTTTCATGAAATCATTATAA

mRNA sequence

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Protein sequence

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MIIPVRCFTCGKVIGDKWKCYKNLLKNEHLTESDALDRLGLVRYCCRQMFITHVDIIKRLLNYGGKNLPLFYDFFFMKSL

Tan0014484 (gene) of Snake gourd v1 genome