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Tan0014495 (gene) of Snake gourd v1 genome

Gene IDTan0014495
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationLG10:6961099..6961621
RNA-Seq ExpressionTan0014495
SyntenyTan0014495
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]1.5e-5091.23Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]4.8e-4990.43Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLQGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLQGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]1.9e-5091.23Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]3.7e-4990.43Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLQGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLQGSR

XP_022137757.1 pre-rRNA-processing protein TSR2 homolog [Momordica charantia]8.7e-5192.11Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP +GL+STNYKAGSVSG Q  ISSVFSRWDGLQMAI NQWGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEE+LQGSR
Subjt:  QLMMIYEENLQGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein7.2e-5191.23Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X29.4e-5191.23Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X12.3e-4990.43Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIE QVA
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIE-QVA

Query:  EQLMMIYEENLQGSR
        EQLMMIYEENL GSR
Subjt:  EQLMMIYEENLQGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X29.4e-5191.23Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEPI+GL+STNYKAGSVS  QM ISSVFSRWDGLQMAI+NQWGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEENL GSR
Subjt:  QLMMIYEENLQGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog4.2e-5192.11Show/hide
Query:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
        MEP +GL+STNYKAGSVSG Q  ISSVFSRWDGLQMAI NQWGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE
Subjt:  MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAE

Query:  QLMMIYEENLQGSR
        QLMMIYEE+LQGSR
Subjt:  QLMMIYEENLQGSR

SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR22.6e-0530.34Show/hide
Query:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEE
        F++ +S V  +WD L +A++N WGG DS +K   +   V   F   K  +    +E  L  +++  F T +ED S   +A +++ IY +
Subjt:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog8.9e-0630.11Show/hide
Query:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG
        F   + +V   W  LQ+A+DN +GG  S QK+  +   +  +F+ +   L  +++E+ + E +   F+T ++DGS+ QVA+Q+  ++++  QG
Subjt:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG

Q3T090 Pre-rRNA-processing protein TSR2 homolog2.3e-0630.53Show/hide
Query:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSR
        F   + +    W  LQ+A++N +GG  S +K+  L   V  +F ++   L ++++E+ L E ++  F+T +EDGS+ QV++QL  ++    +G R
Subjt:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog3.1e-0631.18Show/hide
Query:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG
        F   + +    W  LQ+A++N +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++QL  ++    +G
Subjt:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG

Q969E8 Pre-rRNA-processing protein TSR2 homolog1.4e-0631.18Show/hide
Query:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG
        F+  + +    W  LQ+A++N +GG  S +K+  L   V  +F ++   L ++++E+ L E L   F+T +EDGS+ QV++QL  ++    +G
Subjt:  FQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQG

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region7.2e-2763.54Show/hide
Query:  SGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS
        S  Q DI  + SRW GLQMA+ NQWGG DS +KS  LA ++F   SQS   + VE++ENLLHESLLLSFNTEIEDGSIE+VAEQLM+++EE+L+G+
Subjt:  SGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region1.5e-1140.22Show/hide
Query:  ISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS
        I  +  RW  ++ A++N WGGRDS  K+    + VF +F QSK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+   G+
Subjt:  ISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHESLLLSFNTEIEDGSIEQVAEQLMMIYEENLQGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAATTAATGGACTATCCTCAACCAATTACAAGGCAGGATCTGTCTCCGGCTTCCAAATGGATATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTGCAAATGGC
CATTGATAACCAATGGGGCGGTCGCGATTCTCACCAGAAATCTCTAAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGAAGATC
TGGAAAATTTGCTCCATGAAAGCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATATACGAAGAAAACTTG
CAGGGAAGTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAATTAATGGACTATCCTCAACCAATTACAAGGCAGGATCTGTCTCCGGCTTCCAAATGGATATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTGCAAATGGC
CATTGATAACCAATGGGGCGGTCGCGATTCTCACCAGAAATCTCTAAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGAAGATC
TGGAAAATTTGCTCCATGAAAGCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAGCAATTGATGATGATATACGAAGAAAACTTG
CAGGGAAGTCGTTAG
Protein sequenceShow/hide protein sequence
MEPINGLSSTNYKAGSVSGFQMDISSVFSRWDGLQMAIDNQWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEENL
QGSR