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Tan0014497 (gene) of Snake gourd v1 genome

Gene IDTan0014497
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:13572292..13575761
RNA-Seq ExpressionTan0014497
SyntenyTan0014497
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-0781.58Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK  ILEEA NSAYAMHPRSTKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.6e-0462.75Show/hide
Query:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV
        F LSTLSVLRDN+A+VEIELPVPD LP S  S  S    TW+ LY +S+ V
Subjt:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-0781.58Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK  ILEEA NSAYAMHPRSTKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-0772.09Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTIGYKIC
        Q RLCVP+ISELK  ILEEA NSAYAMHP STKMY+T+    C
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTIGYKIC

TYJ96613.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.1e-0778.95Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK+ ILEEA NSAYAMHP STKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.6e-0462.75Show/hide
Query:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV
        F LSTLSVLRDN+A+VEIELPVPD LP S  S  S    TW+ LY +S+ V
Subjt:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.1e-0750Show/hide
Query:  LENWMEPRGDRSSVRAKVLPEAIWYRVHTGHFLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICVVVNF
        LEN   PRG+RSS++   L + +        FLLSTLSVL DNNA+VEIELPVPD LP S  S  S    TW+ LY + + V + F
Subjt:  LENWMEPRGDRSSVRAKVLPEAIWYRVHTGHFLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICVVVNF

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase9.0e-0881.58Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK  ILEEA NSAYAMHPRSTKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

A0A5A7TKT0 Reverse transcriptase2.7e-0462.75Show/hide
Query:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV
        F LSTLSVLRDN+A+VEIELPVPD LP S  S  S    TW+ LY +S+ V
Subjt:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV

A0A5A7TKT0 Reverse transcriptase9.0e-0881.58Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK  ILEEA NSAYAMHPRSTKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.4e-0772.09Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTIGYKIC
        Q RLCVP+ISELK  ILEEA NSAYAMHP STKMY+T+    C
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTIGYKIC

A0A5D3BBC9 Retrotransposable element Tf23.4e-0778.95Show/hide
Query:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI
        Q RLCVP+ISELK+ ILEEA NSAYAMHP STKMY+T+
Subjt:  QRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTI

A0A5D3D150 Reverse transcriptase2.7e-0462.75Show/hide
Query:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV
        F LSTLSVLRDN+A+VEIELPVPD LP S  S  S    TW+ LY +S+ V
Subjt:  FLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICV

A0A5D3D150 Reverse transcriptase2.0e-0750Show/hide
Query:  LENWMEPRGDRSSVRAKVLPEAIWYRVHTGHFLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICVVVNF
        LEN   PRG+RSS++   L + +        FLLSTLSVL DNNA+VEIELPVPD LP S  S  S    TW+ LY + + V + F
Subjt:  LENWMEPRGDRSSVRAKVLPEAIWYRVHTGHFLLSTLSVLRDNNAIVEIELPVPDILPLSTRSSTSLILCTWVVLYSKSICVVVNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGAAGACTATGTGTCCCGAGTATTAGTGAGCTTAAAGATACTATTTTAGAGGAAGCTCGCAATTCAGCTTATGCTATGCATCCAAGAAGCACCAAGATGTATAA
AACTATAGGGTATAAAATCTGTAAAATGCTGGAAAATTGGATGGAGCCAAGAGGAGATAGGTCGAGTGTAAGGGCCAAGGTTCTACCCGAGGCTATATGGTACCGTGTGC
ACACTGGTCATTTTCTGTTGTCGACGTTGAGTGTACTTCGTGACAACAATGCTATCGTAGAGATTGAGCTCCCAGTGCCTGACATCCTGCCATTGTCTACTAGAAGCTCC
ACGAGCTTGATATTGTGTACGTGGGTGGTGTTGTATAGCAAGTCCATATGTGTTGTAGTAAATTTTAAGGGGACTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGAAGACTATGTGTCCCGAGTATTAGTGAGCTTAAAGATACTATTTTAGAGGAAGCTCGCAATTCAGCTTATGCTATGCATCCAAGAAGCACCAAGATGTATAA
AACTATAGGGTATAAAATCTGTAAAATGCTGGAAAATTGGATGGAGCCAAGAGGAGATAGGTCGAGTGTAAGGGCCAAGGTTCTACCCGAGGCTATATGGTACCGTGTGC
ACACTGGTCATTTTCTGTTGTCGACGTTGAGTGTACTTCGTGACAACAATGCTATCGTAGAGATTGAGCTCCCAGTGCCTGACATCCTGCCATTGTCTACTAGAAGCTCC
ACGAGCTTGATATTGTGTACGTGGGTGGTGTTGTATAGCAAGTCCATATGTGTTGTAGTAAATTTTAAGGGGACTATGTAG
Protein sequenceShow/hide protein sequence
MQRRLCVPSISELKDTILEEARNSAYAMHPRSTKMYKTIGYKICKMLENWMEPRGDRSSVRAKVLPEAIWYRVHTGHFLLSTLSVLRDNNAIVEIELPVPDILPLSTRSS
TSLILCTWVVLYSKSICVVVNFKGTM