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Tan0014551 (gene) of Snake gourd v1 genome

Gene IDTan0014551
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG10:10620892..10621729
RNA-Seq ExpressionTan0014551
SyntenyTan0014551
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.4e-0755.88Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITM
        + VL     +VEIELPVPD LP S  S  +    ST IVR  +DVCWLHAV RAK AG  GGGVT  +
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITM

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0749.37Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DVCWLHAV RAK AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]9.9e-0843.64Show/hide
Query:  GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-----------------------TNLIFW---STSIVREVNDVCWLHAVCRAKL
        GV GGPHYIV                   EIEL VPD LP S  SS                        + I W   S  IVRE NDVCWLHAV RAK+
Subjt:  GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-----------------------TNLIFW---STSIVREVNDVCWLHAVCRAKL

Query:  AGSSGGGVTI
        AG SGGGVT+
Subjt:  AGSSGGGVTI

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]8.4e-0752.11Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP      S   + + + W  S  IVR  +DVCWLHAVCRAK+AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCRAKLAGSSGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0749.37Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DVCWLHAV RAK AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase8.2e-0849.37Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DVCWLHAV RAK AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.1e-0755.88Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITM
        + VL     +VEIELPVPD LP S  S  +    ST IVR  +DVCWLHAV RAK AG  GGGVT  +
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITM

A0A5D3CAC6 Uncharacterized protein4.8e-0843.64Show/hide
Query:  GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-----------------------TNLIFW---STSIVREVNDVCWLHAVCRAKL
        GV GGPHYIV                   EIEL VPD LP S  SS                        + I W   S  IVRE NDVCWLHAV RAK+
Subjt:  GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-----------------------TNLIFW---STSIVREVNDVCWLHAVCRAKL

Query:  AGSSGGGVTI
        AG SGGGVT+
Subjt:  AGSSGGGVTI

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.1e-0752.11Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP      S   + + + W  S  IVR  +DVCWLHAVCRAK+AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCRAKLAGSSGGGV

A0A5D3DX39 Reverse transcriptase8.2e-0849.37Show/hide
Query:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV
        + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DVCWLHAV RAK AG  GGGV
Subjt:  MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATATTCTACTAGAAGCTCCACGAACTTGATATTTTGGTCAACAAG
TATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAATTACTATGATGGCTTATTCCGATT
TTGCCCTTTCGTGTTATCAATTTCAAGTTAAACGAGCAATACATACTCATAGTCCTATTTTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATATTCTACTAGAAGCTCCACGAACTTGATATTTTGGTCAACAAG
TATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAATTACTATGATGGCTTATTCCGATT
TTGCCCTTTCGTGTTATCAATTTCAAGTTAAACGAGCAATACATACTCATAGTCCTATTTTAAGTTAG
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITMMAYSDFALSCYQFQVKRAIHTHSPILS