; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014559 (gene) of Snake gourd v1 genome

Gene IDTan0014559
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S27
Genome locationLG06:18949702..18950833
RNA-Seq ExpressionTan0014559
SyntenyTan0014559
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0042788 - polysomal ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY68717.1 hypothetical protein CUMW_266320 [Citrus unshiu]4.7e-4196.51Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_006446889.1 40S ribosomal protein S27-2 [Citrus clementina]4.7e-4196.51Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022148956.1 40S ribosomal protein S27-2-like [Momordica charantia]9.5e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022960233.1 40S ribosomal protein S27-2-like [Cucurbita moschata]4.7e-4196.51Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0A0K9G0 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A1S3CCJ2 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1D6X7 40S ribosomal protein S274.6e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

E5GB53 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-11.1e-4091.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S271.5e-3784.88Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEKTKHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-37.1e-4090.48Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S273.8e-4191.86Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ VLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-21.1e-4395.35Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein7.8e-4291.67Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S277.5e-4595.35Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein2.2e-3681.4Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein5.0e-4190.48Show/hide
Query:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEK KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGACAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCGTTCTTCATGGACGT
GAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTAGTATGTGGGAATTGCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTA
AGCTAACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
TTTTTAATTAATATCCGAATGGACGGTTATACCCTCCAGTTCCTGACAGTGTGTAGCCCTAGGCACTTCAAAAACCTAAAGGCTGAGATTTATTTCTAACTAAATCCGAC
GGTTCGCAATTTCCAGCCGCTCCTTTATATTCGTTCTAGACGGCGGCGCCCGCCTTCTTTCATAACATTCATCGCACCGCCCTGTTCTTCTCGCGAACTCTCGTTGGGAT
TTTAGGGTTCGCGATCCAGACAATTCCTTTCTGATCAACATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGACAAAGCACAAGCTCAA
GCGTCTCGTACAGTCGCCCAACTCGTTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTAGTATGTGGGAATT
GCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAATTCATTGGCCCCAGCATTGGCTTGTAGTAG
GATCAGGATTGGTGGGTTTTGAATTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTACGTTTTGGTTGTTGATTATTCAATTTTGTTGGGGAAGAA
GAGCATTTTGGCACCGCTGTTGCAGTACGTTAATTTTAATGTTGTCAATGAAACTAAGTTTTGTTTGAAGTAATTCACTCCTAGTGTTTTGCGTGTTCTCCATTACTTTC
TCTATTCAATTTTTCTGGGAAAGAAAGAGCATTTGGATTTGCACCGC
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPAELEKTKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD