; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014592 (gene) of Snake gourd v1 genome

Gene IDTan0014592
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:18243346..18247150
RNA-Seq ExpressionTan0014592
SyntenyTan0014592
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.4e-0863.46Show/hide
Query:  KILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL   L   V+ G + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  KILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0852.63Show/hide
Query:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +L VR SN      PR NR S++ + + + +       +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.8e-0655.74Show/hide
Query:  RANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        R NR S++   L + +       +  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  RANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0852.63Show/hide
Query:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +L VR SN      PR NR S++ + + + +       +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]7.0e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.6e-0863.46Show/hide
Query:  KILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +IL   L   V+ G + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  KILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase1.6e-0852.63Show/hide
Query:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +L VR SN      PR NR S++ + + + +       +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein8.9e-0755.74Show/hide
Query:  RANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        R NR S++   L + +       +  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  RANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase1.6e-0852.63Show/hide
Query:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +L VR SN      PR NR S++ + + + +       +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  ILGVRSSN-----WPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3DUS7 Uncharacterized protein3.4e-0682.86Show/hide
Query:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAGACAAGTGCGACGAGTTTTGGGATGTTTGATCCGCCAACATGAAAAATTTGAAGGTAGCACAAGATCGTCAGAAGAAGGAAGGCTGAAGACAGAAATTTTCTG
TCAAATCCGAGAGGTCTCTGATGTTTTGGTTGTTCTGATCTGTATTCTTGGCGTTAGAAGCTCTAATTGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTAC
CCGAGGCTTTATGGTACCGTGTGCACATAGGTCTGATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAA
AGACGATGGGAATGTTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCAGACAAGTGCGACGAGTTTTGGGATGTTTGATCCGCCAACATGAAAAATTTGAAGGTAGCACAAGATCGTCAGAAGAAGGAAGGCTGAAGACAGAAATTTTCTG
TCAAATCCGAGAGGTCTCTGATGTTTTGGTTGTTCTGATCTGTATTCTTGGCGTTAGAAGCTCTAATTGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTAC
CCGAGGCTTTATGGTACCGTGTGCACATAGGTCTGATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAA
AGACGATGGGAATGTTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MVRQVRRVLGCLIRQHEKFEGSTRSSEEGRLKTEIFCQIREVSDVLVVLICILGVRSSNWPRANRSSVRAKILPEALWYRVHIGLILLSTLSVLRDNSAVVSAGRAPLRQ
RRWECWAGPTTS