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Tan0014660 (gene) of Snake gourd v1 genome

Gene IDTan0014660
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon gag protein
Genome locationLG10:19012713..19015784
RNA-Seq ExpressionTan0014660
SyntenyTan0014660
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-1969.41Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVNP-NKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKSLK + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVNP-NKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-0555.56Show/hide
Query:  DIVSVMMTKTNTMEERMTRMQEQINDLMKAIEERDSQIAYLKSQIESQDVAESS
        +I+SVM+T  +T E RMT +++++N LMK +EERD +IA+LK+ IES D AESS
Subjt:  DIVSVMMTKTNTMEERMTRMQEQINDLMKAIEERDSQIAYLKSQIESQDVAESS

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1868.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PS S FDRLK+TNDQ +R+MKSLK + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

TYK19713.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

TrEMBL top hitse value%identityAlignment
A0A5A7UV73 Retrotransposon gag protein1.4e-1969.41Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVNP-NKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKSLK + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVNP-NKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

A0A5D3CD55 Ty3-gypsy retrotransposon protein4.2e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

A0A5D3CD55 Ty3-gypsy retrotransposon protein2.6e-0555.56Show/hide
Query:  DIVSVMMTKTNTMEERMTRMQEQINDLMKAIEERDSQIAYLKSQIESQDVAESS
        +I+SVM+T  +T E RMT +++++N LMK +EERD +IA+LK+ IES D AESS
Subjt:  DIVSVMMTKTNTMEERMTRMQEQINDLMKAIEERDSQIAYLKSQIESQDVAESS

A0A5D3CD55 Ty3-gypsy retrotransposon protein4.2e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

A0A5D3CUI5 Gag protease polyprotein4.2e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PSTS FDRLK+TNDQ +R+MKS K + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

A0A5D3DZZ8 Retrotransposon gag protein9.3e-1968.24Show/hide
Query:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE
        RLS+STSKKD+PS S FDRLK+TNDQ +R+MKSLK + F E N  +KIHS VPSRMKRK S+ IN EGSL VK   +I TNPTNE
Subjt:  RLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVN-PNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACTTGCACATTGGTTCTACTACCCATAGTTGCTCTAATGAACTAAGGTTGGAAGAGGATGAAGTAACAATACTGTCGGGGGCATCAACTAACAACAAGTTCCT
GGTCAAGTGTAACCCTTTGTTCGATTTTGACTCCGACATAGTGTCTGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATGACAAGGATGCAGGAACAAATCAACG
ACTTAATGAAGGCGATTGAAGAAAGAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAGTCAAGATGTCGCTGAATCAAGTCAAACTCCTGACCTCCGTCTTCGA
TCGCATCAAGCATGCAACTACTCGACCTTCAGTCTTCCAAAGAATGAGTATGGTCGCGACGGAAGAAGAAAATCAAGGTTAAGTGTCTCCACATCAAAGAAAGATCAACC
TTCAACATCTGTTTTTGATCGTCTCAAAGTAACAAACGATCAACATGAAAGAAAGATGAAATCCTTAAAGGAAGAACTGTTCGATGAAGTGAACCCCAATAAGATTCATA
GTATTGTTCCTTCACGTATGAAAAGGAAGTTCTCTATTCTCATAAATAAAGAAGGCTCCTTGAAGGTAAAGAAAAATCTTGTCATTGTAACAAATCCTACAAATGAAGAA
TTTGGGACTTCGTCGTTTTCTCTCCAAATTCGAGGTATTTCATCGCTTCCTCTAAAATTTGAGGGGCTTCGTTGCTTCATCTCCAAGTTCGAGGGACTTTCTTGCTTCCT
CTACAAATTCGAGGGACTTCCTTGCTTCCTCTACAAGTTCGAGGGACTTCGTCGCTTCCTCTCCAAGTTCGTCCTTCTTTCGGCGCCTTCATCTTCAAGGTCTGGTTGCA
GTAACTTCATCTTCAAGGTCCGACTTCGACGCTCCATCTTCAAGGTCCGACTTTCGGCGCTTCGTCTTCAAAGTCTGACTTTTGGTGGCACTTCGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACTTGCACATTGGTTCTACTACCCATAGTTGCTCTAATGAACTAAGGTTGGAAGAGGATGAAGTAACAATACTGTCGGGGGCATCAACTAACAACAAGTTCCT
GGTCAAGTGTAACCCTTTGTTCGATTTTGACTCCGACATAGTGTCTGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATGACAAGGATGCAGGAACAAATCAACG
ACTTAATGAAGGCGATTGAAGAAAGAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAGTCAAGATGTCGCTGAATCAAGTCAAACTCCTGACCTCCGTCTTCGA
TCGCATCAAGCATGCAACTACTCGACCTTCAGTCTTCCAAAGAATGAGTATGGTCGCGACGGAAGAAGAAAATCAAGGTTAAGTGTCTCCACATCAAAGAAAGATCAACC
TTCAACATCTGTTTTTGATCGTCTCAAAGTAACAAACGATCAACATGAAAGAAAGATGAAATCCTTAAAGGAAGAACTGTTCGATGAAGTGAACCCCAATAAGATTCATA
GTATTGTTCCTTCACGTATGAAAAGGAAGTTCTCTATTCTCATAAATAAAGAAGGCTCCTTGAAGGTAAAGAAAAATCTTGTCATTGTAACAAATCCTACAAATGAAGAA
TTTGGGACTTCGTCGTTTTCTCTCCAAATTCGAGGTATTTCATCGCTTCCTCTAAAATTTGAGGGGCTTCGTTGCTTCATCTCCAAGTTCGAGGGACTTTCTTGCTTCCT
CTACAAATTCGAGGGACTTCCTTGCTTCCTCTACAAGTTCGAGGGACTTCGTCGCTTCCTCTCCAAGTTCGTCCTTCTTTCGGCGCCTTCATCTTCAAGGTCTGGTTGCA
GTAACTTCATCTTCAAGGTCCGACTTCGACGCTCCATCTTCAAGGTCCGACTTTCGGCGCTTCGTCTTCAAAGTCTGACTTTTGGTGGCACTTCGTCTTAA
Protein sequenceShow/hide protein sequence
MSNLHIGSTTHSCSNELRLEEDEVTILSGASTNNKFLVKCNPLFDFDSDIVSVMMTKTNTMEERMTRMQEQINDLMKAIEERDSQIAYLKSQIESQDVAESSQTPDLRLR
SHQACNYSTFSLPKNEYGRDGRRKSRLSVSTSKKDQPSTSVFDRLKVTNDQHERKMKSLKEELFDEVNPNKIHSIVPSRMKRKFSILINKEGSLKVKKNLVIVTNPTNEE
FGTSSFSLQIRGISSLPLKFEGLRCFISKFEGLSCFLYKFEGLPCFLYKFEGLRRFLSKFVLLSAPSSSRSGCSNFIFKVRLRRSIFKVRLSALRLQSLTFGGTSS