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Tan0014722 (gene) of Snake gourd v1 genome

Gene IDTan0014722
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:109776270..109776839
RNA-Seq ExpressionTan0014722
SyntenyTan0014722
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC68026.1 hypothetical protein OsI_35837 [Oryza sativa Indica Group]2.2e-1335.43Show/hide
Query:  KTLYVQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKI
        + ++V  L  P G  D  +I Q F   DA+ ILN++       D + W  D  GVF+V+SAYHLA++LN  +  SSSS+ +   +W  LW  +   KVKI
Subjt:  KTLYVQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKI

Query:  CAWKVFKDIIPSKANIIGKGIDTNDRC
         AWK   + +P+  N   + ++ ++ C
Subjt:  CAWKVFKDIIPSKANIIGKGIDTNDRC

VVA38592.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]1.6e-1642.24Show/hide
Query:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA
        D  K+   F   D  DI+ +        D I+W  D  G+FTVKSAY +A+ + S     SSS+NS TS  W+ +WN     K+KI AW+V  DI+P+KA
Subjt:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA

Query:  NIIGKGIDTNDRCLLC
        N+I KG+D  D C+ C
Subjt:  NIIGKGIDTNDRCLLC

XP_030505432.1 uncharacterized protein LOC115720422 [Cannabis sativa]3.8e-1337.8Show/hide
Query:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAW
        V       G  D  ++   F +D  E IL++  G    +D +IW  D  G+ TVKSAYHLA   N+SSLP SSSN S  +  WK  WNQ+   K+K   W
Subjt:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAW

Query:  KVFKDIIPSKANIIGKGIDTNDRCLLC
        + F  I+P+  N+  K +  +  C  C
Subjt:  KVFKDIIPSKANIIGKGIDTNDRCLLC

XP_030507384.1 uncharacterized protein LOC115722329 [Cannabis sativa]6.2e-1637.98Show/hide
Query:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKICAWK
        + +  +  G  D  K+   F  D  + IL+     P S D +IWG DP G+ T+KSAYHLA + +SS  PSSS+ +S  S WK++W+     K+K   WK
Subjt:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKICAWK

Query:  VFKDIIPSKANIIGKGIDTNDRCLLCRNK
         F  ++PS  NI  + +  +  C LC NK
Subjt:  VFKDIIPSKANIIGKGIDTNDRCLLCRNK

XP_030510081.1 uncharacterized protein LOC115724856 [Cannabis sativa]2.9e-1342.11Show/hide
Query:  KIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKICAWKVFKDIIPSKANIIG
        K+K  F +   E IL      P  SD++IWG  P G+ TVKSAYHLA +L S+ +PSSSS N     WK LW+     K+K   WK F  I+P   N+  
Subjt:  KIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKICAWKVFKDIIPSKANIIG

Query:  KGIDTNDRCLLCRN
        K I  +  C +C N
Subjt:  KGIDTNDRCLLCRN

TrEMBL top hitse value%identityAlignment
A0A5E4GGB8 PREDICTED: reverse mRNAase (Fragment)8.0e-1742.24Show/hide
Query:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA
        D  K+   F   D  DI+ +        D I+W  D  G+FTVKSAY +A+ + S     SSS+NS TS  W+ +WN     K+KI AW+V  DI+P+KA
Subjt:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA

Query:  NIIGKGIDTNDRCLLC
        N+I KG+D  D C+ C
Subjt:  NIIGKGIDTNDRCLLC

A0A803QH54 Uncharacterized protein2.2e-1437.8Show/hide
Query:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAW
        V    +P G  D  ++ + F +D    IL +  G P S D +IW  DP G+ TVKSAYHL+   N+S+LP SSSN S  +  WK  W+Q    KVK   W
Subjt:  VQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAW

Query:  KVFKDIIPSKANIIGKGIDTNDRCLLC
        + F  I+P+  N+  + +  +  C  C
Subjt:  KVFKDIIPSKANIIGKGIDTNDRCLLC

M5VU98 Reverse transcriptase domain-containing protein3.0e-1641.38Show/hide
Query:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA
        D  K+   F   D  DI+ +        D I+W  D  G+FTVKSAY +A+ + S     SSS+NS T   W+ +WN     K+KI AW+V  DI+P+KA
Subjt:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA

Query:  NIIGKGIDTNDRCLLC
        N+I KG+D  D C+ C
Subjt:  NIIGKGIDTNDRCLLC

M5XHI9 Reverse transcriptase domain-containing protein3.0e-1641.38Show/hide
Query:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA
        D  K+   F   D  DI+ +        D I+W  D  G+FTVKSAY +A+ + S     SSS+NS T   W+ +WN     K+KI AW+V  DI+P+KA
Subjt:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA

Query:  NIIGKGIDTNDRCLLC
        N+I KG+D  D C+ C
Subjt:  NIIGKGIDTNDRCLLC

M5XK32 Reverse transcriptase domain-containing protein (Fragment)3.0e-1641.38Show/hide
Query:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA
        D  K+   F   D  D + +        D I+W  D  G+FTVKSAY +A+ + S     SSS+NS TS  W+ +WN     K+KI AW+V  DI+P+KA
Subjt:  DPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSS-WKALWNQETSLKVKICAWKVFKDIIPSKA

Query:  NIIGKGIDTNDRCLLC
        N+I KG+D  D C+ C
Subjt:  NIIGKGIDTNDRCLLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein9.6e-0722.86Show/hide
Query:  KEPFKTLYVQHLFHPTGG---CDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQE
        +E +K + + +LF   G     D +KI Q     D   I  +   +    D IIW  +  G +TV+S Y L  +  S+++P+ +  + S      +WN  
Subjt:  KEPFKTLYVQHLFHPTGG---CDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQE

Query:  TSLKVKICAWKVFKDIIPSKANIIGKGIDTNDRCLLCRNK
           K+K   W+     + +   +  +G+  +  C  C  +
Subjt:  TSLKVKICAWKVFKDIIPSKANIIGKGIDTNDRCLLCRNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGCCTTTCAAAACTCTTTATGTACAACACCTTTTCCATCCAACCGGAGGTTGTGACCCTACAAAAATTAAACAGGCTTTCTCAAACGACGATGCAGAGGATAT
TCTTAATATGCAAGCTGGCCGCCCAGGCTCTTCAGACACTATTATTTGGGGCGCCGATCCTAAGGGGGTTTTCACTGTTAAATCGGCCTACCACCTAGCAATCAATTTAA
ACTCGAGTTCCTTACCTTCTAGCTCGAGCAATAATTCTTCCACCTCTAGCTGGAAAGCTCTTTGGAACCAAGAAACTAGCCTTAAAGTGAAGATTTGTGCTTGGAAGGTC
TTCAAGGATATTATTCCCTCAAAAGCTAATATTATTGGCAAAGGAATTGACACTAATGACCGATGTCTTTTGTGCAGGAACAAAAAGAGACAACAACTCACTCGAATGGG
GATGCAAATTTACAAAGCAAGCTTGGGAATGGTGGAAGCCTATCGACTTTTGGCATTGGATCGTGAAGAATGGAAAGGGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGCCTTTCAAAACTCTTTATGTACAACACCTTTTCCATCCAACCGGAGGTTGTGACCCTACAAAAATTAAACAGGCTTTCTCAAACGACGATGCAGAGGATAT
TCTTAATATGCAAGCTGGCCGCCCAGGCTCTTCAGACACTATTATTTGGGGCGCCGATCCTAAGGGGGTTTTCACTGTTAAATCGGCCTACCACCTAGCAATCAATTTAA
ACTCGAGTTCCTTACCTTCTAGCTCGAGCAATAATTCTTCCACCTCTAGCTGGAAAGCTCTTTGGAACCAAGAAACTAGCCTTAAAGTGAAGATTTGTGCTTGGAAGGTC
TTCAAGGATATTATTCCCTCAAAAGCTAATATTATTGGCAAAGGAATTGACACTAATGACCGATGTCTTTTGTGCAGGAACAAAAAGAGACAACAACTCACTCGAATGGG
GATGCAAATTTACAAAGCAAGCTTGGGAATGGTGGAAGCCTATCGACTTTTGGCATTGGATCGTGAAGAATGGAAAGGGAACTGA
Protein sequenceShow/hide protein sequence
MKEPFKTLYVQHLFHPTGGCDPTKIKQAFSNDDAEDILNMQAGRPGSSDTIIWGADPKGVFTVKSAYHLAINLNSSSLPSSSSNNSSTSSWKALWNQETSLKVKICAWKV
FKDIIPSKANIIGKGIDTNDRCLLCRNKKRQQLTRMGMQIYKASLGMVEAYRLLALDREEWKGN