; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014763 (gene) of Snake gourd v1 genome

Gene IDTan0014763
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein
Genome locationLG01:107810506..107811364
RNA-Seq ExpressionTan0014763
SyntenyTan0014763
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR023674 - Ribosomal protein L1-like
IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570486.1 Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]2.6e-4496.97Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

KAG6605991.1 Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4393.94Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

KAG7035940.1 60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-4393.88Show/hide
Query:  SKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        SKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Subjt:  SKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

XP_022943718.1 60S ribosomal protein L10a [Cucurbita moschata]2.6e-4496.97Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

XP_022958674.1 60S ribosomal protein L10a-like [Cucurbita moschata]1.7e-4393.94Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

TrEMBL top hitse value%identityAlignment
A0A6J1FXB0 Ribosomal protein1.3e-4496.97Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

A0A6J1G271 Ribosomal protein4.1e-4393.94Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIF DS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

A0A6J1H5S7 Ribosomal protein8.2e-4493.94Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

A0A6J1JCI3 Ribosomal protein1.3e-4496.97Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

A0A6J1K725 Ribosomal protein8.2e-4493.94Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

SwissProt top hitse value%identityAlignment
B7F845 60S ribosomal protein L10a1.1e-4082.83Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSE L+E IS + G+S EK R FTET+ELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

B8B9K6 60S ribosomal protein L10a1.1e-4082.83Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSE L+E IS + G+S EK R FTET+ELQIGLKNYD QKDK FSGSVKLPHIPRPKMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

P59230 60S ribosomal protein L10a-21.2e-3983.84Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

P59231 60S ribosomal protein L10a-32.9e-3884Show/hide
Query:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PRPKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

Q8VZB9 60S ribosomal protein L10a-12.0e-3983.84Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE I++I G S  KKRNF ETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

Arabidopsis top hitse value%identityAlignment
AT1G08360.1 Ribosomal protein L1p/L10e family1.4e-4083.84Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE I++I G S  KKRNF ETIELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

AT2G27530.1 Ribosomal protein L1p/L10e family8.4e-4183.84Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

AT2G27530.2 Ribosomal protein L1p/L10e family8.4e-4183.84Show/hide
Query:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRPKMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

AT5G22440.1 Ribosomal protein L1p/L10e family2.1e-3984Show/hide
Query:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PRPKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV

AT5G22440.2 Ribosomal protein L1p/L10e family2.1e-3984Show/hide
Query:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
        MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PRPKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Subjt:  MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGTCATTTCATCTATCTTCGGTGATAGCAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACT
AAAGAACTATGATCTACAGAAGGACAAGTGTTTCAGTGGGTCAGTGAAGTTGCCCCACATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTG
AAGAGGCAGAGAAGATTGGTTTGGATTATATGGATGTGGAGGGTTTGAAGAAGCTTAACAAGAACAAGAAGTTGGTGAACTTGCCAAGAAATATCATGCATTTTAGCATC
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGTCATTTCATCTATCTTCGGTGATAGCAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACT
AAAGAACTATGATCTACAGAAGGACAAGTGTTTCAGTGGGTCAGTGAAGTTGCCCCACATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTG
AAGAGGCAGAGAAGATTGGTTTGGATTATATGGATGTGGAGGGTTTGAAGAAGCTTAACAAGAACAAGAAGTTGGTGAACTTGCCAAGAAATATCATGCATTTTAGCATC
TGA
Protein sequenceShow/hide protein sequence
MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVNLPRNIMHFSI