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Tan0014786 (gene) of Snake gourd v1 genome

Gene IDTan0014786
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG05:29749547..29750698
RNA-Seq ExpressionTan0014786
SyntenyTan0014786
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052074.1 vacuolar protein sorting-associated protein 41-like protein [Cucumis melo var. makuwa]7.8e-1037.69Show/hide
Query:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK
        CQ++P AKGL NKSF ++D+L  VFG+DRAT    +T  D+ SN  D  D     D ++E+    P   +QG+D + D++  +  SR +  G + S GSK
Subjt:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK

Query:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE
         K  + + E V  +   +D     L+MIAE
Subjt:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]5.2e-1442.97Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT
        +++P AKGLRNK   H+DDL + FGKDRAT A  + P+DM S+      ED + + +Q++Y+  PP      D   +++  T TS+  T+G S S GSK 
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT

Query:  KCSAYQSEMVVVVRDAMDVNASHLKMIA
        K S Y SEMV VVR  M +  +HL+ +A
Subjt:  KCSAYQSEMVVVVRDAMDVNASHLKMIA

XP_038877524.1 uncharacterized protein LOC120069782 [Benincasa hispida]1.7e-1238.71Show/hide
Query:  DMNDELD--EVDSTYNDVHMHTVECQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSS-QEYYVSIPPFSTQGMDT
        D NDE    EV+    D H         P AKGL++K FL++D+L+IVFGKDRAT   +ETP D  S   +H  EDI L S   E   SIP  +   +D 
Subjt:  DMNDELD--EVDSTYNDVHMHTVECQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSS-QEYYVSIPPFSTQGMDT

Query:  THDEMHETHTSRNNTVGASTSRGSKTKCSAYQSEMVVVVRDAMDVNASHLKMIAE
         ++   +T  SR  T  ++  RG+K K + +QSEM+ +V  AMD+  S ++ + +
Subjt:  THDEMHETHTSRNNTVGASTSRGSKTKCSAYQSEMVVVVRDAMDVNASHLKMIAE

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]2.9e-1244.19Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT
        +++P  KGL NKSF +FDDLA VFGKD AT   AE P DM S+V     E  + D SQE+            D + DE H T T      G ++ RGSK 
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT

Query:  KCSAYQSEMVVVVRDAMDVNASHLKMIAE
        K   Y SE+V V ++AMD     LK IAE
Subjt:  KCSAYQSEMVVVVRDAMDVNASHLKMIAE

XP_038899910.1 uncharacterized protein LOC120087100 [Benincasa hispida]1.7e-0934.88Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSI-PPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK
        +++P AKG+ NKSF H+DDL+ VFGKDRA   ++E P  M  N     +++I L S       +    S    D   +E  E  T R  +V   TS+GSK
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSI-PPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK

Query:  TKCSAYQSEMVVVVRDAMDVNASHLKMIA
         K  ++Q+EM+ ++R  +++ ++H+  +A
Subjt:  TKCSAYQSEMVVVVRDAMDVNASHLKMIA

TrEMBL top hitse value%identityAlignment
A0A5A7U9Q0 Vacuolar protein sorting-associated protein 41-like protein3.8e-1037.69Show/hide
Query:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK
        CQ++P AKGL NKSF ++D+L  VFG+DRAT    +T  D+ SN  D  D     D ++E+    P   +QG+D + D++  +  SR +  G + S GSK
Subjt:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK

Query:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE
         K  + + E V  +   +D     L+MIAE
Subjt:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE

A0A5A7UHV9 Retrotransposon protein2.5e-0936.36Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTD---EDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRG
        +++P AKGL NKSF+H+D+L+ VFGKDRAT   AE+ +D+ SN     D    D+  D      +  PP  + G++ + D++ ET T+R +    + S G
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTD---EDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRG

Query:  SKTKCSAYQSEMVVVVRDAMDVNASHLKMIAE
        SK K   + ++   +VR A++     L  IAE
Subjt:  SKTKCSAYQSEMVVVVRDAMDVNASHLKMIAE

A0A5A7V4P8 Retrotransposon protein2.5e-0936.15Show/hide
Query:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK
        CQ++P AKGL NK F ++D+L  VFG+DRAT   AET  D+ SN   +  +  ++    E     PP  +QG+D + D++  +  SR    G + S GSK
Subjt:  CQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSK

Query:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE
         K  + +   V  +  A+D     L+ IAE
Subjt:  TKCSAYQSEMVVVVRDAMDVNASHLKMIAE

A0A5D3BQP3 Retrotransposon protein1.9e-0939.06Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT
        +++P  KGL NK F ++D+L  VFG+DRAT   AET  DM SN  D  D     D ++E+    PP  +QG+D   D++H +  SR    G + S GSK 
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT

Query:  KCSAYQSEMVVVVRDAMDVNASHLKMIA
        K  + +   V  V  A+D     L+MIA
Subjt:  KCSAYQSEMVVVVRDAMDVNASHLKMIA

A0A6J1DW73 uncharacterized protein LOC1110250182.5e-1442.97Show/hide
Query:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT
        +++P AKGLRNK   H+DDL + FGKDRAT A  + P+DM S+      ED + + +Q++Y+  PP      D   +++  T TS+  T+G S S GSK 
Subjt:  QAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETHTSRNNTVGASTSRGSKT

Query:  KCSAYQSEMVVVVRDAMDVNASHLKMIA
        K S Y SEMV VVR  M +  +HL+ +A
Subjt:  KCSAYQSEMVVVVRDAMDVNASHLKMIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAATTGATATGAACGATGAATTGGATGAAGTTGACTCAACCTATAACGATGTACATATGCACACAGTAGAATGTCAGGCGTACCCAGGTGCAAAGGGGTTGCG
CAACAAGTCATTTCTTCATTTTGATGATTTAGCCATTGTCTTTGGTAAAGACCGGGCTACATGTGCAGCTGCGGAGACTCCTATAGATATGACATCAAATGTAGGAGACC
ACACAGACGAAGATATTAACTTAGACAGTTCTCAAGAATACTATGTGTCAATACCACCATTTTCAACTCAAGGAATGGACACGACTCATGATGAGATGCATGAGACACAT
ACTAGTCGGAACAACACAGTAGGTGCTTCAACATCTAGAGGTAGTAAAACGAAGTGCTCTGCTTATCAATCTGAGATGGTTGTTGTGGTACGAGATGCTATGGATGTGAA
TGCGTCCCACCTAAAGATGATTGCAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAAATTGATATGAACGATGAATTGGATGAAGTTGACTCAACCTATAACGATGTACATATGCACACAGTAGAATGTCAGGCGTACCCAGGTGCAAAGGGGTTGCG
CAACAAGTCATTTCTTCATTTTGATGATTTAGCCATTGTCTTTGGTAAAGACCGGGCTACATGTGCAGCTGCGGAGACTCCTATAGATATGACATCAAATGTAGGAGACC
ACACAGACGAAGATATTAACTTAGACAGTTCTCAAGAATACTATGTGTCAATACCACCATTTTCAACTCAAGGAATGGACACGACTCATGATGAGATGCATGAGACACAT
ACTAGTCGGAACAACACAGTAGGTGCTTCAACATCTAGAGGTAGTAAAACGAAGTGCTCTGCTTATCAATCTGAGATGGTTGTTGTGGTACGAGATGCTATGGATGTGAA
TGCGTCCCACCTAAAGATGATTGCAGAGTAG
Protein sequenceShow/hide protein sequence
MGEIDMNDELDEVDSTYNDVHMHTVECQAYPGAKGLRNKSFLHFDDLAIVFGKDRATCAAAETPIDMTSNVGDHTDEDINLDSSQEYYVSIPPFSTQGMDTTHDEMHETH
TSRNNTVGASTSRGSKTKCSAYQSEMVVVVRDAMDVNASHLKMIAE