; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014850 (gene) of Snake gourd v1 genome

Gene IDTan0014850
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationLG06:1613559..1619088
RNA-Seq ExpressionTan0014850
SyntenyTan0014850
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025857.1 RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-14095.42Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN  SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_022964622.1 protein WHI4 [Cucurbita moschata]3.2e-14195.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]1.2e-14095.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]1.4e-14196.18Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]5.1e-13994.27Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D N+QETSSDDGGSEPDEPSKK EQS E +VT  NALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein1.6e-13893.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D N+QETSSDDGGSEPDEPSKK +QSNE VVT  NA+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI41.2e-13893.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D N+QETSSDDGGSEPDEPSKK +QSNE VVT  +A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X13.3e-13994.27Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSSDDGGSEPDEPSKKTE+S+E V+T  NALS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI41.6e-14195.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 25.9e-14195.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRK  D NAQETSS+DGGSEPDEPSKKTEQSNE VV  GN LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a5.9e-1338.95Show/hide
Query:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 22.9e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.3e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 22.0e-1340.66Show/hide
Query:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-3937.22Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N +  +          A  AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGG-MHIEYARSKM
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G  + ++YARS+M
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3737.01Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N +  +          A  AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein4.2e-3836.7Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N +  +          A  AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G +    +R  MRK
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-8057Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQSNEVVVTSGNALSAPYE---
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R      +Q+  SD+G S+PDE  +   ++   E   T   A S P     
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQSNEVVVTSGNALSAPYE---

Query:  ----HHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
            H EK ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIE
Subjt:  ----HHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.8e-8861.84Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQSNEVVVTSGNALSAPYE-------HHEK-NDGG----P
        Q+GS LHIELARSNSRRK +PG G YVVID R      +Q+  SD+G S+PDE  +   ++   E   T   A S P         H EK ++GG     
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSK--KTEQSNEVVVTSGNALSAPYE-------HHEK-NDGG----P

Query:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCACCAGCCTTATGATCCTTACTATCTCTATCATCAACCGGACCCGAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTACCCGACGACGT
CAAGGCGCGCGAGATTCACAACCTTTTCCGTCGCCGGCCGGGCTTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCGTTTGCCACCTTTTACA
ATCATCAATCTGCCGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAG
CACAAACCAGGCGGTGGAGCATATGTTGTGATAGACAAAAGGAAAAATATTGACTTCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCAGATGAACCATC
AAAAAAGACCGAACAAAGCAACGAGGTTGTGGTGACTTCTGGTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTTA
TCGCAAATCTTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTTAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCA
TTTGCTGATTTTGAGGAAATTGAGCAAGCTAGCAAGGTTATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGGGGCGGCATGCATATAGAGTACGCACGGTC
TAAAATGAGGAAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATCAAATACAATTTTCATAATACTCACCATCTTTAAATTAGCAAAAATAGAAAATATTCCTACATACATTATACATTATGCATATTTCCCGCTCGACTCGGAACGGAGGG
GAATTTTTACCCACTTAATCGAACCCTTTCATACTCCGCCGTGCTCGGAGTTAACTCCGGCCAACATCATTTTTTCCGTGAATTCTTCCGGCAATTCGCCGATGGCCCAC
CAGCCTTATGATCCTTACTATCTCTATCATCAACCGGACCCGAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTACCCGACGACGTCAAGGCGCG
CGAGATTCACAACCTTTTCCGTCGCCGGCCGGGCTTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCGTTTGCCACCTTTTACAATCATCAAT
CTGCCGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCACAAACCA
GGCGGTGGAGCATATGTTGTGATAGACAAAAGGAAAAATATTGACTTCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCAGATGAACCATCAAAAAAGAC
CGAACAAAGCAACGAGGTTGTGGTGACTTCTGGTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGTGGGCCATGCTCCACTTTGTTTATCGCAAATC
TTGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTTAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGAT
TTTGAGGAAATTGAGCAAGCTAGCAAGGTTATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGGGGCGGCATGCATATAGAGTACGCACGGTCTAAAATGAG
GAAGTCTTAGTTGAAAAGCACTCATCAGTCTAGTATGATTCAAAAAGTCTGATTGATTTACTTGCTGCGAGGAATGCTTGCTTGTGGTTATTGGCCCACTCATTTGCTGC
TGCTCTGAAGTTTTGTGGCATTCATCAGTCTGGTATTGCTTCAAGTGCTTGCAAACTACACATCGCATCGCTCCCTAGATAATGACAACAGGTTATGTAAACTGATAAAT
TCATTAGCATTTTAACTTAAAAAATATAGAGTTAAGTACTGTTAAGTGTTGGAAGTCGTTTCCATTCTGGATTTTTAGTTTGAAGAAAGCTGTTGCTATGCAGTAAGTAG
TTAATCTTGTAGCGCAAGTGTTAGGAGAAGCTTTCTAAGCTGAACAAGGAGCTGACTTTACCCGTCTTAGTTTAAAGAGCAAAGAAGAGAGGGATCAGTTGTCACAGATT
AGAGGCAGTTCATTTGGTAACTCAGTACGTAAGATATTGTGGAACTCAATTAAAAGTGGCTCAATTAGAGGACTTACAGTAGGTTGAGTTCGGTCGGTAACCATAAGAAC
AAGCAAGCTTGTGTTCCACTTTAAACGTCACACTTATATCCAAACCCTGGGATGGATCCCAGGGGCTGGTTTTGCCGTGTAGGAGGAAGGTGTTGCGGGTCATTAGAAGG
TAATAGGACAAGATATCTTCTCTTGAACTTATAGTATCCTTTTTTCCGGCTACAACTAACATCTCAATCAAACTGCCAAAGATGACCTAGGAGTGAATAACAGGCATCCA
TGTCTACCACATCACACTAACCGTGTCTAGTAGTTCTTGCCAACAAAAATTGGGACTTAACTCATCAGTAACTTTGTGTTCACCTCATTTCTTAATCCATCCAATTTTGT
AAGGATTTGGATACTTTTCAATTGGAAGTTGTCTTGCCTAACTAGTGATCTTGCTACAACCATTTGTTTTTTTTTTTTATTTTCGTTGTCAACAACATGTCACAAACTAT
CCTGTTCTAGAAATTTGATTCTTCTAGGATTTCGAAGGATGTTTTGGGGAAAGTAGGACCTCCATCTCCATGTATCCTCATCAGGGATTCCTCCCCAAATTCATATTCAT
TGTTGTAGTTATTCCTGCATCATCTATTAGGGGCACGTGTTTGCGTAAGGGACATCGATAACAGAAGAATTCAAGAGCTTCCCCTCCAAAGTACACTCAACTTACAGACT
AAGCAAAATCATACCTTACTCAACTCTCACCTCCCCACCCTTCTATTATGTTGTCCCCACGTTCCAGTAACAAAACCCACGGCCTCCCTTTACTAACTTTACAATCGGTC
GCCACTCTCCTCCCTCGCGCGCCTCTTATACACTTTCAATAGGTGGTGTCTATCAGACACTCACTCAGGAGTGAATAGTGATCGATGTCCTTGTCGATTACCCTCTGTAG
TTTAGCACTAGATTGGAGTTGGCTTTAACACAAGAATTGCCTTTGATAAGGAACATTTTGCTATTTTCATCTTAGCCTATTGCCCAAATCACAATTTCTTTTAAATCATC
ATTAATTCATCATCCATAAATTCCTTGTCTACTAAAGATAACGTCTCTCTTCACACTGGCTTGTCTTTTTCACTCCACCACTTGCTTGAAACTGTGGCAGTTCAAAGTTT
TCTCCTAGAGGGTTGTTATGAACTACCCTCTTGTTGTGTCCTTTGCTTGCTACTGATTTCAATTCTATTTTGGACCAAAACCCAAAAAAAACAAGAACACCAAGTAGATA
TAGAAACCACCGACGCCCCCATAACAGAATTGGACCTTAGTTTTCTAGGTAGGATTCACGGATTTGAAC
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKNIDFNAQETSSDDGGSEPDEPSKKTEQSNEVVVTSGNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVA
FADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS