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Tan0014904 (gene) of Snake gourd v1 genome

Gene IDTan0014904
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG07:31472823..31473416
RNA-Seq ExpressionTan0014904
SyntenyTan0014904
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]9.4e-6972.73Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +KA+K  T+E+MVVST PLK  S  KE K  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

KAA0054202.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-6871.66Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +K +K AT+E+MVVST PLK  SK K+++  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEK+YPFPDSDVPDML+QLL+ +L++LPECKR  EM +V+DP YCKYH VISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]2.1e-6872.19Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +K +K AT+E+MVVST PLK  S  KE K  K Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL +D++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]9.4e-6972.73Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +KA+K  T+E+MVVST PLK  S  KE K  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]4.7e-6872.19Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA+RG KD LVP+VKK++K  K AEK +KS ++ESMVV+T PLK FSK KE +  K+ +   + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
         TLKERQEKVYPFPDSD+ DMLEQLL+ +L++LPECKR E+  KVDDP YCKYHRVISHPVEKCFVLKELILRLA+E +IEL+L+E+
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein1.9e-6771.66Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FE+LATRAHDMELSIA RGN DLLV +V+KE+K  KS +KA+K AT+E+MVVST PLK  SK K++K  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++L ECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

A0A5A7TZU9 Ribonuclease H4.5e-6972.73Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +KA+K  T+E+MVVST PLK  S  KE K  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

A0A5A7VE63 Uncharacterized protein1.0e-6872.19Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +K +K AT+E+MVVST PLK  S  KE K  K Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL +D++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

A0A5D3BIH8 Uncharacterized protein4.5e-6972.73Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +KA+K  T+E+MVVST PLK  S  KE K  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEKVYPFPDSD+PDML+QLL+ +L++LPECKR  EM +V+DP YCKYHRVISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

A0A5D3CUG5 Ty3-gypsy retrotransposon protein1.0e-6871.66Show/hide
Query:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR
        MC QGM+WGLLYILQGIKPR+FEELATRAHDMELSIA RGN DLLVP+V+KE+K  KS +K +K AT+E+MVVST PLK  SK K+++  K+Q+ G + R
Subjt:  MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHR

Query:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI
        PTLKERQEK+YPFPDSDVPDML+QLL+ +L++LPECKR  EM +V+DP YCKYH VISHPVEKCFVLKELIL+LA + KIEL LD++
Subjt:  PTLKERQEKVYPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCATCCAAGGCATGAACTGGGGGCTTCTTTACATCTTGCAGGGCATAAAGCCTCGTTCTTTCGAGGAGCTAGCGACGCGCGCTCATGACATGGAACTAAGCATCGC
TGCTAGAGGGAATAAAGACCTCTTAGTCCCAGACGTAAAGAAAGAGGAGAAAGGGTTCAAAAGCGCGGAGAAGGCTATGAAAAGCGCCACTGAGGAATCCATGGTCGTCA
GCACGATCCCTCTAAAACGTTTCTCAAAAGTTAAGGAAGTTAAGCCAAGAAAACAACAAGAAGTGGGCGCACAACATCGTCCAACTTTGAAAGAAAGACAAGAGAAAGTA
TATCCATTTCCAGACTCCGACGTCCCGGATATGTTGGAGCAACTATTGGACACACGACTGGTTGAACTTCCAGAATGTAAACGATCGGAAGAGATGAAAAAGGTCGATGA
TCCCAAGTATTGCAAGTATCATCGAGTCATCAGTCATCCAGTTGAGAAATGCTTCGTCCTAAAAGAGCTAATTCTAAGATTAGCTAAAGAGGGAAAGATTGAGCTAAACC
TCGATGAAATTGTCACACCCCCTCCCGAACTACCAGCTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCATCCAAGGCATGAACTGGGGGCTTCTTTACATCTTGCAGGGCATAAAGCCTCGTTCTTTCGAGGAGCTAGCGACGCGCGCTCATGACATGGAACTAAGCATCGC
TGCTAGAGGGAATAAAGACCTCTTAGTCCCAGACGTAAAGAAAGAGGAGAAAGGGTTCAAAAGCGCGGAGAAGGCTATGAAAAGCGCCACTGAGGAATCCATGGTCGTCA
GCACGATCCCTCTAAAACGTTTCTCAAAAGTTAAGGAAGTTAAGCCAAGAAAACAACAAGAAGTGGGCGCACAACATCGTCCAACTTTGAAAGAAAGACAAGAGAAAGTA
TATCCATTTCCAGACTCCGACGTCCCGGATATGTTGGAGCAACTATTGGACACACGACTGGTTGAACTTCCAGAATGTAAACGATCGGAAGAGATGAAAAAGGTCGATGA
TCCCAAGTATTGCAAGTATCATCGAGTCATCAGTCATCCAGTTGAGAAATGCTTCGTCCTAAAAGAGCTAATTCTAAGATTAGCTAAAGAGGGAAAGATTGAGCTAAACC
TCGATGAAATTGTCACACCCCCTCCCGAACTACCAGCTACTTAG
Protein sequenceShow/hide protein sequence
MCIQGMNWGLLYILQGIKPRSFEELATRAHDMELSIAARGNKDLLVPDVKKEEKGFKSAEKAMKSATEESMVVSTIPLKRFSKVKEVKPRKQQEVGAQHRPTLKERQEKV
YPFPDSDVPDMLEQLLDTRLVELPECKRSEEMKKVDDPKYCKYHRVISHPVEKCFVLKELILRLAKEGKIELNLDEIVTPPPELPAT