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Tan0014926 (gene) of Snake gourd v1 genome

Gene IDTan0014926
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor PRE6-like
Genome locationLG01:55666236..55666984
RNA-Seq ExpressionTan0014926
SyntenyTan0014926
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]2.4e-3086.6Show/hide
Query:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSSA+   ISDDQI DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLF+
Subjt:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

XP_010096378.1 transcription factor PRE6 [Morus notabilis]1.2e-2985.11Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RRSSSR    S N ISDDQITDLVSKLQRLIPEIRN RS KVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA TENDSA+A+IIRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]9.4e-3593.62Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSS  QISDDQI+DLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLFM
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]2.1e-3492.55Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRN+S  QISDDQI+DLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLFM
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]2.4e-3088.54Show/hide
Query:  MSTRRSSSRSRNSS-ANQISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSS A  ISDDQI+DLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEA+IIRSLFM
Subjt:  MSTRRSSSRSRNSS-ANQISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A1S3CPL2 transcription factor PRE6-like1.2e-3086.6Show/hide
Query:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSSA+   ISDDQI DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLF+
Subjt:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like1.2e-3086.6Show/hide
Query:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSSA+   ISDDQI DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLF+
Subjt:  MSTRRSSSRSRNSSANQ--ISDDQITDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like4.6e-3593.62Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSS  QISDDQI+DLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLFM
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like4.6e-3593.62Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR SSRSRNSS  QISDDQI+DLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA+IIRSLFM
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

W9R9Q5 BHLH domain-containing protein5.8e-3085.11Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RRSSSR    S N ISDDQITDLVSKLQRLIPEIRN RS KVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA TENDSA+A+IIRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI68.6e-2363.83Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR  SRSR S +++I+D+QI+DLVSKLQ L+PE R   + +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  SA+A+IIRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

Q0DUR2 Transcription factor ILI68.6e-2363.83Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS+RR  SRSR S +++I+D+QI+DLVSKLQ L+PE R   + +V +S+VLQETCNYIR+LH+EVDDLSERLS+LLA ++  SA+A+IIRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

Q8GW32 Transcription factor PRE62.1e-2978.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL
        MS+RR SSRSR S +++ISDDQI+DLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEA+IIRSL
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL

Q9FLE9 Transcription factor PRE13.3e-2265.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS RRS    ++SSA +ISD+Q+ DLVSKL++++PEI +  RS K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + DS EA++IRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

Q9LJX1 Transcription factor PRE51.9e-2265.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS RRS    + S+A++ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EA++IRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-3078.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL
        MS+RR SSRSR S +++ISDDQI+DLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEA+IIRSL
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.0e-2365.59Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL
        MS RRS SR ++S  ++IS+DQI DL+ KLQ+L+PE+R++ RS KVSA++VLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+A++IRSL
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-2365.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS RRS    + S+A++ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR LHREVD+LS+RLSQLL + + DS EA++IRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM

AT5G15160.1 BANQUO 26.8e-2367.42Show/hide
Query:  SSSRSRN-SSANQISDDQITDLVSKLQRLIPEIR-NTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL
        SS RSR  SS+++ISDDQITDL+SKL++ IPEIR N RS+ VSASKVLQETCNYIRNL++E DDLS+RL+QLL + + +S +A++IRSL
Subjt:  SSSRSRN-SSANQISDDQITDLVSKLQRLIPEIR-NTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.3e-2365.26Show/hide
Query:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM
        MS RRS    ++SSA +ISD+Q+ DLVSKL++++PEI +  RS K SASKVLQETCNYIRNL+REVD+LSERLSQLL + + DS EA++IRSL M
Subjt:  MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGAAGATCCTCCTCTCGTTCCAGAAACTCCTCAGCCAATCAAATCTCCGACGATCAGATCACTGACCTTGTTTCCAAGTTGCAGCGCCTCATCCCGGAGAT
TCGCAACACCCGTTCCCACAAGGTGTCAGCTTCAAAAGTGTTACAAGAAACATGCAATTACATAAGGAACTTGCATAGGGAAGTGGATGATTTGAGCGAGCGATTGTCGC
AGCTTTTGGCCGCAACAGAAAACGACAGTGCCGAGGCTTCTATTATTAGGAGTTTGTTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCAGAAGATCCTCCTCTCGTTCCAGAAACTCCTCAGCCAATCAAATCTCCGACGATCAGATCACTGACCTTGTTTCCAAGTTGCAGCGCCTCATCCCGGAGAT
TCGCAACACCCGTTCCCACAAGGTGTCAGCTTCAAAAGTGTTACAAGAAACATGCAATTACATAAGGAACTTGCATAGGGAAGTGGATGATTTGAGCGAGCGATTGTCGC
AGCTTTTGGCCGCAACAGAAAACGACAGTGCCGAGGCTTCTATTATTAGGAGTTTGTTCATGTAA
Protein sequenceShow/hide protein sequence
MSTRRSSSRSRNSSANQISDDQITDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEASIIRSLFM