; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0014969 (gene) of Snake gourd v1 genome

Gene IDTan0014969
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:67426749..67433080
RNA-Seq ExpressionTan0014969
SyntenyTan0014969
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1442.65Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG
        F LSTLSVL DN+AVVSAG+APLRQRRWEC  GPTTS                                                        C      
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG

Query:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        S  IVR  +DVCWLHA+ RAK AG  GGGVTTWYQS
Subjt:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.9e-0741.32Show/hide
Query:  FLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAGPT-----------------------------TSLVCLSGKTGSTGIVREVND
        F LSTLSVLRDN+AVVSAG            RAPL +R   RW  WA PT                             TS       + S GIVR  +D
Subjt:  FLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAGPT-----------------------------TSLVCLSGKTGSTGIVREVND

Query:  VCWLHAVCRAKLAGSSGGGVT
        VCWLH V RAK  G  GG VT
Subjt:  VCWLHAVCRAKLAGSSGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1442.65Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG
        F LSTLSVL DN+AVVSAG+APLRQRRWEC  GPTTS                                                        C      
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG

Query:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        S  IVR  +DVCWLHA+ RAK AG  GGGVTTWYQS
Subjt:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.7e-0742.59Show/hide
Query:  FLLSTLSVLRDNNAVV----------SAGRAPLRQRRW----------ECWAGPTTSL-----VCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGG
        F LSTLSVLRDNNAV+          SA  +      W          E +   T  +     +  +   GSTGIVR  +DVCWLHAV RAK  G  GGG
Subjt:  FLLSTLSVLRDNNAVV----------SAGRAPLRQRRW----------ECWAGPTTSL-----VCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGG

Query:  VTTWYQSS
        VTTW  S+
Subjt:  VTTWYQSS

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.9e-0750Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        F  STLSVL DN+AVV     P+            TS       + S GIVR  +DVCWLH+V RAK A   GGGVTTWYQS
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.0e-1442.65Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG
        F LSTLSVL DN+AVVSAG+APLRQRRWEC  GPTTS                                                        C      
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG

Query:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        S  IVR  +DVCWLHA+ RAK AG  GGGVTTWYQS
Subjt:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

A0A5D3BTP3 Reverse transcriptase2.0e-1442.65Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG
        F LSTLSVL DN+AVVSAG+APLRQRRWEC  GPTTS                                                        C      
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLV------------------------------------------------------CLSGKTG

Query:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        S  IVR  +DVCWLHA+ RAK AG  GGGVTTWYQS
Subjt:  STGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

A0A5D3CJL4 Retrotrans_gag domain-containing protein3.1e-0753.75Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPT----TSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGV
        FLLSTLSVL DN+AVV     P+       +  P+     S VC     GS GIVR  +DVCWLHAVCRAK+AG  GGGV
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPT----TSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGV

A0A5D3CJX3 CCHC-type domain-containing protein1.8e-0742.59Show/hide
Query:  FLLSTLSVLRDNNAVV----------SAGRAPLRQRRW----------ECWAGPTTSL-----VCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGG
        F LSTLSVLRDNNAV+          SA  +      W          E +   T  +     +  +   GSTGIVR  +DVCWLHAV RAK  G  GGG
Subjt:  FLLSTLSVLRDNNAVV----------SAGRAPLRQRRW----------ECWAGPTTSL-----VCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGG

Query:  VTTWYQSS
        VTTW  S+
Subjt:  VTTWYQSS

A0A5D3CU23 Retrotrans_gag domain-containing protein1.4e-0750Show/hide
Query:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS
        F  STLSVL DN+AVV     P+            TS       + S GIVR  +DVCWLH+V RAK A   GGGVTTWYQS
Subjt:  FLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAGPTTSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCAAGTGCAATCCATGCTTCATTAAAGACAAACCAAGCTTTATTTATATATTTCAAATTCCTCTTCAATTTCTTATCATTTTCATATCAGAACCTTTATGAAAA
AAACTTGTGTTTTCTTGACTTGATCAATCTTGCTTGTGGAGTGATTCGGATCTCATACAAGTTCTCTTGCCTTGAGATGTTTGATCGACAAGGTAATCTGATTTTACTTT
CCTTGAGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGC
CCCACTACATCTTTAGTGTGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAATGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGG
TAGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCAAGTGCAATCCATGCTTCATTAAAGACAAACCAAGCTTTATTTATATATTTCAAATTCCTCTTCAATTTCTTATCATTTTCATATCAGAACCTTTATGAAAA
AAACTTGTGTTTTCTTGACTTGATCAATCTTGCTTGTGGAGTGATTCGGATCTCATACAAGTTCTCTTGCCTTGAGATGTTTGATCGACAAGGTAATCTGATTTTACTTT
CCTTGAGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGC
CCCACTACATCTTTAGTGTGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAATGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGG
TAGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MNSSAIHASLKTNQALFIYFKFLFNFLSFSYQNLYEKNLCFLDLINLACGVIRISYKFSCLEMFDRQGNLILLSLSHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAG
PTTSLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTTWYQSS