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Tan0014979 (gene) of Snake gourd v1 genome

Gene IDTan0014979
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
Genome locationLG05:20711139..20711507
RNA-Seq ExpressionTan0014979
SyntenyTan0014979
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.0e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  +P SS     P  TV +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.0e-2559.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  DP SS     P   V +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.0e-2559.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  DP SS     P   V +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]8.0e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  +P SS     P  TV +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]2.7e-2656.62Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSDKSQRPTVTTLVD-------PGSSIIAVEPDP------TVHIDSAQSKKDTG-G
        M+ I+SGKVL DLSKLEPLDGSNYR+WSQKLLIFF QLE+DY++ +  +Q   VTT             ++ A   DP      TV + +A     T   
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSDKSQRPTVTTLVD-------PGSSIIAVEPDP------TVHIDSAQSKKDTG-G

Query:  ADNFEKNNKTVRDHLLNHMTDSLFDLFVVHKSAKVI
        AD FEK+NKTVR HLLNHM DSLFDLFVV KSAKVI
Subjt:  ADNFEKNNKTVRDHLLNHMTDSLFDLFVVHKSAKVI

TrEMBL top hitse value%identityAlignment
A0A1S3C3Z1 uncharacterized protein LOC1034963963.9e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  +P SS     P  TV +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

A0A5A7SKK3 Ty1-copia retrotransposon protein5.0e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  DP SS     P   V +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

A0A5A7UFB4 Ty1-copia retrotransposon protein3.9e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  +P SS     P  TV +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

A0A5D3C5T2 Ty1-copia retrotransposon protein5.0e-2659.2Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV
        MS+  S K+LPDLSKLEPLDG+NYRRWSQKLLIFF QLEVDYVL +D   S  PT T T  DP SS     P   V +     K      + + K+NKTV
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSD--KSQRPTVT-TLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTV

Query:  RDHLLNHMTDSLFDLFVVHKSAKVI
        R HLLNHM+D +FDLFVV KSAK I
Subjt:  RDHLLNHMTDSLFDLFVVHKSAKVI

A0A6J1DWN1 uncharacterized protein LOC1110251971.3e-2656.62Show/hide
Query:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSDKSQRPTVTTLVD-------PGSSIIAVEPDP------TVHIDSAQSKKDTG-G
        M+ I+SGKVL DLSKLEPLDGSNYR+WSQKLLIFF QLE+DY++ +  +Q   VTT             ++ A   DP      TV + +A     T   
Subjt:  MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSDKSQRPTVTTLVD-------PGSSIIAVEPDP------TVHIDSAQSKKDTG-G

Query:  ADNFEKNNKTVRDHLLNHMTDSLFDLFVVHKSAKVI
        AD FEK+NKTVR HLLNHM DSLFDLFVV KSAKVI
Subjt:  ADNFEKNNKTVRDHLLNHMTDSLFDLFVVHKSAKVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGATCAAATCGGGAAAGGTGCTGCCAGATCTGTCTAAATTAGAACCACTTGACGGATCAAACTACCGACGTTGGTCTCAGAAACTCTTGATCTTCTTCGGACA
GTTGGAGGTCGATTATGTTCTACTGTCGGACAAATCACAGAGGCCTACTGTTACAACATTGGTAGATCCAGGAAGTTCCATCATTGCTGTTGAGCCTGATCCAACTGTCC
ATATCGATTCTGCCCAATCGAAAAAGGATACTGGTGGAGCTGACAATTTCGAGAAAAACAACAAGACGGTCCGCGACCATCTCCTGAATCACATGACTGATTCTCTGTTC
GATCTCTTTGTCGTTCATAAATCTGCAAAGGTAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGATCAAATCGGGAAAGGTGCTGCCAGATCTGTCTAAATTAGAACCACTTGACGGATCAAACTACCGACGTTGGTCTCAGAAACTCTTGATCTTCTTCGGACA
GTTGGAGGTCGATTATGTTCTACTGTCGGACAAATCACAGAGGCCTACTGTTACAACATTGGTAGATCCAGGAAGTTCCATCATTGCTGTTGAGCCTGATCCAACTGTCC
ATATCGATTCTGCCCAATCGAAAAAGGATACTGGTGGAGCTGACAATTTCGAGAAAAACAACAAGACGGTCCGCGACCATCTCCTGAATCACATGACTGATTCTCTGTTC
GATCTCTTTGTCGTTCATAAATCTGCAAAGGTAATATGA
Protein sequenceShow/hide protein sequence
MSMIKSGKVLPDLSKLEPLDGSNYRRWSQKLLIFFGQLEVDYVLLSDKSQRPTVTTLVDPGSSIIAVEPDPTVHIDSAQSKKDTGGADNFEKNNKTVRDHLLNHMTDSLF
DLFVVHKSAKVI