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Tan0015024 (gene) of Snake gourd v1 genome

Gene IDTan0015024
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:1207821..1209006
RNA-Seq ExpressionTan0015024
SyntenyTan0015024
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGT37611.1 G-type lectin receptor kinase [Oryza sativa Indica Group]1.6e-0536.47Show/hide
Query:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE
        PLI+ESD+  V++ LN  NV  ++ S  I +       L+     ++ R+ NK+ H LA L   SG + VW+ C PA +  LLD+
Subjt:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE

KAE8717546.1 hypothetical protein F3Y22_tig00110044pilonHSYRG00164 [Hibiscus syriacus]3.2e-0640.51Show/hide
Query:  SIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP
        S   +++E DS  VIS L+ +N D+SE+S  I EA G A+GL  C +  + R DNK  H LA + +   D   W E  P
Subjt:  SIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-0837.96Show/hide
Query:  VQVLEAKVVVKGLSQLFTLSKESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECI
        V++LEA  +++GL  L  L    + PL +E+DS EV SLLNR   D ++    ++E + L        F KV RE N   H+LA  AS   +S++W +C 
Subjt:  VQVLEAKVVVKGLSQLFTLSKESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECI

Query:  PANMYSLL
        P N  S+L
Subjt:  PANMYSLL

XP_039067750.1 uncharacterized protein LOC120213762 isoform X1 [Hibiscus syriacus]5.0e-0740.74Show/hide
Query:  KESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP
        +ES   +++E DS  VIS L+ +N D+SE+S  I EA G A+GL  C +  + R DNK  H LA + +   D   W E  P
Subjt:  KESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP

XP_039067751.1 uncharacterized protein LOC120213762 isoform X2 [Hibiscus syriacus]4.2e-0641.33Show/hide
Query:  LIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP
        +++E DS  VIS L+ +N D+SE+S  I EA G A+GL  C +  + R DNK  H LA + +   D   W E  P
Subjt:  LIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP

TrEMBL top hitse value%identityAlignment
A0A1R3K9I2 RNase H domain-containing protein1.7e-0539.47Show/hide
Query:  LIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPA
        +IVE D+L +I  LN  N+DFS V  +I+EA  L+     C F  + R  N V H LA  + S G+ +VW + +P+
Subjt:  LIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPA

A0A6A3BKL9 RNase H domain-containing protein1.6e-0640.51Show/hide
Query:  SIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP
        S   +++E DS  VIS L+ +N D+SE+S  I EA G A+GL  C +  + R DNK  H LA + +   D   W E  P
Subjt:  SIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIP

A0A6J1DNV9 uncharacterized protein LOC1110224037.5e-0937.96Show/hide
Query:  VQVLEAKVVVKGLSQLFTLSKESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECI
        V++LEA  +++GL  L  L    + PL +E+DS EV SLLNR   D ++    ++E + L        F KV RE N   H+LA  AS   +S++W +C 
Subjt:  VQVLEAKVVVKGLSQLFTLSKESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECI

Query:  PANMYSLL
        P N  S+L
Subjt:  PANMYSLL

B8AJV1 Uncharacterized protein3.9e-0536.47Show/hide
Query:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE
        P+I+E+D+ EV++ L   +   S     I EA    +GL       + R+ NKV H LA +A SSG+ L W+ C PA +  LL++
Subjt:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE

Q94GP2 Putative reverse transcriptase3.9e-0536.47Show/hide
Query:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE
        P+I+E+D+ EV++ L   +   S     I EA    +GL       + R+ NKV H LA +A SSG+ L W+ C PA +  LL++
Subjt:  PLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVWKECIPANMYSLLDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTCCTTCGAAGAAACAACTTGTCATCTGTTGTGGGAGTGCAGGTCCTTGAAGCTAAAGTCGTCGTCAAGGGGTTGTCCCAGCTTTTTACTCTGTCGAAGGAGTC
GATTCCTCCCCTCATTGTGGAATCTGATTCCCTTGAGGTTATTAGCCTGCTCAACCGAGACAATGTAGACTTTTCTGAGGTTAGCCTCTTCATTGATGAAGCTATTGGGT
TAGCCAAAGGGTTAAGTTACTGTATTTTTTGTAAAGTTCCTAGAGAGGATAATAAAGTCGTCCATAATCTTGCGGCTTTGGCATCCTCCTCGGGCGATTCTTTGGTCTGG
AAAGAGTGTATTCCTGCGAACATGTATTCTCTTCTTGATGAGAGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTCCTTCGAAGAAACAACTTGTCATCTGTTGTGGGAGTGCAGGTCCTTGAAGCTAAAGTCGTCGTCAAGGGGTTGTCCCAGCTTTTTACTCTGTCGAAGGAGTC
GATTCCTCCCCTCATTGTGGAATCTGATTCCCTTGAGGTTATTAGCCTGCTCAACCGAGACAATGTAGACTTTTCTGAGGTTAGCCTCTTCATTGATGAAGCTATTGGGT
TAGCCAAAGGGTTAAGTTACTGTATTTTTTGTAAAGTTCCTAGAGAGGATAATAAAGTCGTCCATAATCTTGCGGCTTTGGCATCCTCCTCGGGCGATTCTTTGGTCTGG
AAAGAGTGTATTCCTGCGAACATGTATTCTCTTCTTGATGAGAGGATTTGA
Protein sequenceShow/hide protein sequence
MEVLRRNNLSSVVGVQVLEAKVVVKGLSQLFTLSKESIPPLIVESDSLEVISLLNRDNVDFSEVSLFIDEAIGLAKGLSYCIFCKVPREDNKVVHNLAALASSSGDSLVW
KECIPANMYSLLDERI