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Tan0015036 (gene) of Snake gourd v1 genome

Gene IDTan0015036
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG09:32522065..32522376
RNA-Seq ExpressionTan0015036
SyntenyTan0015036
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.9e-1856.73Show/hide
Query:  MARGGKRGRQVEARTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEK
        M RG  R +  +A+T  A  +   G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+P D E    LIEK
Subjt:  MARGGKRGRQVEARTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEK

Query:  CFRV
        CFRV
Subjt:  CFRV

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-1755.34Show/hide
Query:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE    LIEKC
Subjt:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.5e-1755.34Show/hide
Query:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE    LIEKC
Subjt:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

WP_217833179.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]7.2e-2078.46Show/hide
Query:  VSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVE
        +SEGESSHPQ EVN+EEQ+FTRI QRLA S+GS ++DPEKKY IERLKALGATTFEGT DPV+ E
Subjt:  VSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVE

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]2.3e-1875Show/hide
Query:  MEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRVM
        ME+++F RITQRLA SVGS Q DPEKK+GIERLKALGATTF+GTTDP+D E+   LIEKCF+VM
Subjt:  MEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRVM

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.2e-1556.04Show/hide
Query:  EARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRV
        EA         G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D EKKYGIERLKALGATTF GTT+PVD E    LIEKCF+V
Subjt:  EARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRV

A0A5A7SKG0 Uncharacterized protein4.7e-1762.5Show/hide
Query:  REVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRVM
        RE + G+S+H   + NMEE+IF +I QRLA+ V  AQAD EKKYGIER+KALGAT F+GT D V+VE    LIEKCF VM
Subjt:  REVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRVM

A0A5A7T1M0 Reverse transcriptase7.3e-1855.34Show/hide
Query:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE    LIEKC
Subjt:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3BB91 Reverse transcriptase7.3e-1855.34Show/hide
Query:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPEKKYG ERLKALGATTF GTT+P DVE    LIEKC
Subjt:  MARGGKRGR-QVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.9e-1856.73Show/hide
Query:  MARGGKRGRQVEARTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEK
        M RG  R +  +A+T  A  +   G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPEKKYGIERLKALGATTF GTT+P D E    LIEK
Subjt:  MARGGKRGRQVEARTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEK

Query:  CFRV
        CFRV
Subjt:  CFRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCAGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAAATCTTCACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAAAAGTATGGCATTGAAAGACTGAAGG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGTTGATGTTGAGGTTTTGTTTAATCTGATTGAGAAGTGTTTTAGGGTTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCAGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAAATCTTCACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAAAAGTATGGCATTGAAAGACTGAAGG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGTTGATGTTGAGGTTTTGTTTAATCTGATTGAGAAGTGTTTTAGGGTTATGTGA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVEARTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYGIERLKALGATTFEGTTDPVDVEVLFNLIEKCFRVM