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Tan0015046 (gene) of Snake gourd v1 genome

Gene IDTan0015046
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPre-mRNA-splicing factor SLU7
Genome locationLG10:56109973..56116056
RNA-Seq ExpressionTan0015046
SyntenyTan0015046
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0000386 - second spliceosomal transesterification activity (molecular function)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
InterPro domainsIPR039974 - Pre-mRNA-splicing factor SLU7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582387.1 Pre-mRNA-splicing factor SLU7, partial [Cucurbita argyrosperma subsp. sororia]1.4e-0952.08Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYK
        DDIVL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK + +   R   +   IH S   G+   K + LY+
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYK

KAG7018792.1 Pre-mRNA-splicing factor SLU7 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-0967.74Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DDIVL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

XP_022979550.1 pre-mRNA-splicing factor SLU7-like [Cucurbita maxima]3.1e-0967.74Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DDIVL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

XP_038875771.1 uncharacterized protein LOC120068141 [Benincasa hispida]4.8e-1064.91Show/hide
Query:  MKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYKYETVAEVLANIPKEITRDDA
        +K+ RFKVEG E SVLLQIHRSYN+ R +LKK WL KY+ + + LANI  EITR+DA
Subjt:  MKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYKYETVAEVLANIPKEITRDDA

XP_038888098.1 uncharacterized protein LOC120078004 [Benincasa hispida]8.2e-1037.62Show/hide
Query:  MTGIVMLVTITFKESRSEIYNVTSIDEFEYDIEMRVKFNTDYQSPVMYISNDRDVVFFMNHPDIARVQVWIT--SVHK---KCVTDGVEDDEALDQDLEY
        +TGIV+ +T+ +KE ++ IY V +++  E+D+ MRVK+  D+++P +YI ND DV  F+   D++RVQ+++T  S H    K + DG+  D   +   E+
Subjt:  MTGIVMLVTITFKESRSEIYNVTSIDEFEYDIEMRVKFNTDYQSPVMYISNDRDVVFFMNHPDIARVQVWIT--SVHK---KCVTDGVEDDEALDQDLEY

Query:  N
        N
Subjt:  N

TrEMBL top hitse value%identityAlignment
A0A0A0LFN9 Pre-mRNA-splicing factor SLU72.6e-0966.13Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DD+VL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A1S3C1E2 Pre-mRNA-splicing factor SLU72.6e-0966.13Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DD+VL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A5D3D476 Pre-mRNA-splicing factor SLU72.6e-0966.13Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DD+VL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A6J1E9E3 Pre-mRNA-splicing factor SLU71.5e-0967.74Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DDIVL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

A0A6J1ITK9 Pre-mRNA-splicing factor SLU71.5e-0967.74Show/hide
Query:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        DDIVL    +  SL           +EDERRKEEKDERKRKYNVRWNDEVT EDMEAYRMKK
Subjt:  DDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

SwissProt top hitse value%identityAlignment
A2YQU8 Pre-mRNA-splicing factor SLU71.2e-0881.08Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +E  RRKEE DERKRKYNV+WNDEVT EDMEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

O23174 Pre-mRNA-splicing factor SLU7-B2.8e-0567.57Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV + ++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Q6ZK48 Pre-mRNA-splicing factor SLU71.2e-0881.08Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +E  RRKEE DERKRKYNV+WNDEVT EDMEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Q9SHY8 Pre-mRNA-splicing factor SLU7-A3.4e-0670.27Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV++N++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

Arabidopsis top hitse value%identityAlignment
AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor2.4e-0770.27Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV++N++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK

AT4G37120.1 Pre-mRNA splicing Prp18-interacting factor2.0e-0667.57Show/hide
Query:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK
        +ED  R+EEKDERKRKYNV + ++VT E+MEAYRMK+
Subjt:  QEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGGTATCGTTATGCTAGTAACGATAACATTCAAGGAATCACGGTCAGAGATTTATAATGTTACGTCAATCGACGAGTTTGAGTATGACATTGAAATGAGGGTGAA
ATTTAATACGGACTATCAATCACCGGTAATGTATATAAGTAATGATCGAGATGTTGTATTTTTTATGAATCATCCCGACATTGCAAGAGTCCAAGTGTGGATAACATCTG
TACATAAAAAGTGTGTCACAGACGGTGTAGAAGATGATGAAGCTTTAGATCAGGACCTGGAGTACAACCCTGTGCATGAAGAAGAAAGCAATGAGGTTGTTGAATATAAA
GAAGATGAAGAAGAAAATGAATACGGCGACGAAGAAGAATATGAAGATATGGTATATGACGACGAGTACAAGGTAGAGGTATCAAACGAATCTGAAGACGAAGAAGAAGA
TAGAGACGATGGATACATTCCAAATGATGGGCTTCATTTTGCACACTCTGGATGTAGTCCAACCATTTATAGGGATAACTTGCACGAGTGGGGTGATTACTCAAGTCACA
ATGTCAATACCAACGATGCCCAACCCAGTTCACAACCACAAGATTTCATAACACCGTTGGGAGAAGGGAGTGACAACATAGGTTGGTTAACCGGACCATCTATGAGAAAT
GATACAACAGGTCTATCTGCCCCCGTGAATTTCGGAACAACAGACGACATCGTCCTGCATGGGGCAGCTGTTGTTAGTTCTCTTGTAGGCTACTCTCTGTATCTGATCAT
GAATCTTCAGGAGGATGAAAGAAGGAAGGAGGAGAAGGATGAAAGGAAGCGTAAATACAATGTGAGATGGAATGACGAGGTAACTGTGGAGGACATGGAGGCATATAGAA
TGAAAAAGGAGCGGTTTAAAGTTGAAGGTCGTGAGACTTCAGTATTGCTTCAAATTCATCGTTCTTATAATAATGGGAGAGATAACTTAAAGAAAAAATGGTTGTACAAA
TATGAAACAGTTGCAGAAGTTTTGGCCAATATTCCAAAAGAAATTACAAGAGATGATGCAGTGTATCTTGAAAAGTTATGGAAGTCAACTGAATGTCAGGTTATATTCTA
G
mRNA sequenceShow/hide mRNA sequence
ATGACCGGTATCGTTATGCTAGTAACGATAACATTCAAGGAATCACGGTCAGAGATTTATAATGTTACGTCAATCGACGAGTTTGAGTATGACATTGAAATGAGGGTGAA
ATTTAATACGGACTATCAATCACCGGTAATGTATATAAGTAATGATCGAGATGTTGTATTTTTTATGAATCATCCCGACATTGCAAGAGTCCAAGTGTGGATAACATCTG
TACATAAAAAGTGTGTCACAGACGGTGTAGAAGATGATGAAGCTTTAGATCAGGACCTGGAGTACAACCCTGTGCATGAAGAAGAAAGCAATGAGGTTGTTGAATATAAA
GAAGATGAAGAAGAAAATGAATACGGCGACGAAGAAGAATATGAAGATATGGTATATGACGACGAGTACAAGGTAGAGGTATCAAACGAATCTGAAGACGAAGAAGAAGA
TAGAGACGATGGATACATTCCAAATGATGGGCTTCATTTTGCACACTCTGGATGTAGTCCAACCATTTATAGGGATAACTTGCACGAGTGGGGTGATTACTCAAGTCACA
ATGTCAATACCAACGATGCCCAACCCAGTTCACAACCACAAGATTTCATAACACCGTTGGGAGAAGGGAGTGACAACATAGGTTGGTTAACCGGACCATCTATGAGAAAT
GATACAACAGGTCTATCTGCCCCCGTGAATTTCGGAACAACAGACGACATCGTCCTGCATGGGGCAGCTGTTGTTAGTTCTCTTGTAGGCTACTCTCTGTATCTGATCAT
GAATCTTCAGGAGGATGAAAGAAGGAAGGAGGAGAAGGATGAAAGGAAGCGTAAATACAATGTGAGATGGAATGACGAGGTAACTGTGGAGGACATGGAGGCATATAGAA
TGAAAAAGGAGCGGTTTAAAGTTGAAGGTCGTGAGACTTCAGTATTGCTTCAAATTCATCGTTCTTATAATAATGGGAGAGATAACTTAAAGAAAAAATGGTTGTACAAA
TATGAAACAGTTGCAGAAGTTTTGGCCAATATTCCAAAAGAAATTACAAGAGATGATGCAGTGTATCTTGAAAAGTTATGGAAGTCAACTGAATGTCAGGTTATATTCTA
G
Protein sequenceShow/hide protein sequence
MTGIVMLVTITFKESRSEIYNVTSIDEFEYDIEMRVKFNTDYQSPVMYISNDRDVVFFMNHPDIARVQVWITSVHKKCVTDGVEDDEALDQDLEYNPVHEEESNEVVEYK
EDEEENEYGDEEEYEDMVYDDEYKVEVSNESEDEEEDRDDGYIPNDGLHFAHSGCSPTIYRDNLHEWGDYSSHNVNTNDAQPSSQPQDFITPLGEGSDNIGWLTGPSMRN
DTTGLSAPVNFGTTDDIVLHGAAVVSSLVGYSLYLIMNLQEDERRKEEKDERKRKYNVRWNDEVTVEDMEAYRMKKERFKVEGRETSVLLQIHRSYNNGRDNLKKKWLYK
YETVAEVLANIPKEITRDDAVYLEKLWKSTECQVIF