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Tan0015109 (gene) of Snake gourd v1 genome

Gene IDTan0015109
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:69665134..69665478
RNA-Seq ExpressionTan0015109
SyntenyTan0015109
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.2e-0934.91Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF
        WK   S +WKLNT+AAW +  N GG+  I+RD  G  +   C+ I     +  LE   I EGL+ I    +    P+ +E+DS+E I LL+    D +E 
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF

Query:  FFVIDD
         +++++
Subjt:  FFVIDD

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]4.1e-0839.56Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN
        WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I EGL+ I    +    P+ +E+DS+E I LL+
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.6e-1040.57Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF
        W+      W LN DA+WS   +RGG+  I+R   G+ +L G +F+     VKLLEA  I EGL+ +   G   + PL +ETDS EV SLLN    DL++ 
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF

Query:  FFVIDD
         +V+++
Subjt:  FFVIDD

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.3e-0934.23Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTAT
        WK   S +WKLNTDAAW +  N GG+  I+RD  G  +   C+ I     +  LE   I EGL+ I         +    P+ +E+DS+E I LL+    
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTAT

Query:  DLSEFFFVIDD
        D +E  +++++
Subjt:  DLSEFFFVIDD

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.1e-0840.91Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSM-EVISLLNGTATDLSE
        W  +K   WKLN DA+W+SK++  GL  +  D L    + G KF+     V +LEA  I  GL EIL+     IS ++VE+D + EVI+LLN    DLSE
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSM-EVISLLNGTATDLSE

Query:  FFFVIDDPYD
          F  ++  D
Subjt:  FFFVIDDPYD

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.1e-0934.91Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF
        WK   S +WKLNT+AAW +  N GG+  I+RD  G  +   C+ I     +  LE   I EGL+ I    +    P+ +E+DS+E I LL+    D +E 
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF

Query:  FFVIDD
         +++++
Subjt:  FFVIDD

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.0e-0839.56Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN
        WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I EGL+ I    +    P+ +E+DS+E I LL+
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN

A0A6J1DNV9 uncharacterized protein LOC1110224031.2e-1040.57Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF
        W+      W LN DA+WS   +RGG+  I+R   G+ +L G +F+     VKLLEA  I EGL+ +   G   + PL +ETDS EV SLLN    DL++ 
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEF

Query:  FFVIDD
         +V+++
Subjt:  FFVIDD

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X22.0e-0839.56Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN
        WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I EGL+ I    +    P+ +E+DS+E I LL+
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLN

A0A6J1DSV1 uncharacterized protein LOC1110236083.1e-0934.23Show/hide
Query:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTAT
        WK   S +WKLNTDAAW +  N GG+  I+RD  G  +   C+ I     +  LE   I EGL+ I         +    P+ +E+DS+E I LL+    
Subjt:  WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTAT

Query:  DLSEFFFVIDD
        D +E  +++++
Subjt:  DLSEFFFVIDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGGGTTTGGAAGTCTGCAAAGTCGATCGCTTGGAAACTCAACACCGATGCAGCGTGGTCTAGCAAGCTAAATCGTGGTGGACTGGAATGCATTGTTCGAGATTC
TCTTGGGAATCCTCTCTTGGGTGGTTGTAAGTTTATCTCTTATAATTGGCCTGTTAAGCTTCTTGAAGCATATGTTATCCCGGAAGGTTTAAAGGAAATTCTTGCCTGGG
GGAAAAGTCAAATCTCGCCTCTGATCGTGGAAACAGATTCCATGGAGGTTATTTCACTTTTGAATGGCACTGCCACAGACTTATCTGAATTTTTTTTTGTTATTGATGAT
CCTTATGATTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGGGTTTGGAAGTCTGCAAAGTCGATCGCTTGGAAACTCAACACCGATGCAGCGTGGTCTAGCAAGCTAAATCGTGGTGGACTGGAATGCATTGTTCGAGATTC
TCTTGGGAATCCTCTCTTGGGTGGTTGTAAGTTTATCTCTTATAATTGGCCTGTTAAGCTTCTTGAAGCATATGTTATCCCGGAAGGTTTAAAGGAAATTCTTGCCTGGG
GGAAAAGTCAAATCTCGCCTCTGATCGTGGAAACAGATTCCATGGAGGTTATTTCACTTTTGAATGGCACTGCCACAGACTTATCTGAATTTTTTTTTGTTATTGATGAT
CCTTATGATTGCTAA
Protein sequenceShow/hide protein sequence
MVRVWKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD
PYDC