; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0015252 (gene) of Snake gourd v1 genome

Gene IDTan0015252
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLYR motif-containing protein 4
Genome locationLG09:71136787..71137956
RNA-Seq ExpressionTan0015252
SyntenyTan0015252
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453246.1 PREDICTED: LYR motif-containing protein 4 [Cucumis melo]9.0e-3586.67Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MAAP+RSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQS +YSL++PKVKSIMEAH  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_011660289.1 LYR motif-containing protein 4 [Cucumis sativus]2.0e-3487.78Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA+P+RSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SISSAYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_022134602.1 LYR motif-containing protein 4-like [Momordica charantia]1.2e-3485.56Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA P+R+E+LSLLRSLLRTARHFCDYN+REYAKRRAVDGFRHNRNLSDPSSISSAYADG+AQLEVA+RQSTVYS F+PKVKSIM+ H  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_022932898.1 LYR motif-containing protein 4 [Cucurbita moschata]3.0e-3895.56Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA P+RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

XP_038879775.1 LYR motif-containing protein 4-like [Benincasa hispida]1.8e-3588.89Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        M AP+RSE+LSLLRS LRTARHFCDYNIREYAKRRAVDGFRHNRNLSDP SISSAYADGKAQLEVAKRQS VYSL++PKVKSIME H TN
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

TrEMBL top hitse value%identityAlignment
A0A1S3BV74 LYR motif-containing protein 44.4e-3586.67Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MAAP+RSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQS +YSL++PKVKSIMEAH  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A5A7UTC8 LYR motif-containing protein 44.4e-3586.67Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MAAP+RSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQS +YSL++PKVKSIMEAH  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1C021 LYR motif-containing protein 4-like5.7e-3585.56Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA P+R+E+LSLLRSLLRTARHFCDYN+REYAKRRAVDGFRHNRNLSDPSSISSAYADG+AQLEVA+RQSTVYS F+PKVKSIM+ H  N
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1F322 LYR motif-containing protein 41.5e-3895.56Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA P+RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

A0A6J1IC29 LYR motif-containing protein 41.5e-3895.56Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
        MA P+RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN

SwissProt top hitse value%identityAlignment
B5X5U9 LYR motif-containing protein 4A4.1e-0632.94Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIME
        MAA SR++ +SL R L++ ++ F  YN R YA RR  D FR N ++ +P ++       +  L V +RQ ++  +++ + ++I+E
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIME

B8JLQ0 LYR motif-containing protein 46.3e-0734.09Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH
        MA+ SR++ +SL R L++ ++ F  YN R YA RR  DGFR N ++ +P ++       +  L V KRQ ++  L+S +   + +  H
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH

Q6DCS1 LYR motif-containing protein 43.7e-0737.5Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH
        M+A SRS+ LSL + +LR ++ F  YN R YA RR  D FR  +N+ D   I +     K  L V +RQ T+  +++     I  A H
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHH

Q6Q560 Protein ISD114.1e-0634.67Show/hide
Query:  APSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFS
        AP+R + LSL +  ++ A  F +YN REY   +    FR N N  DP  + + + + K  L V KRQS +  +++
Subjt:  APSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFS

Q8K215 LYR motif-containing protein 48.0e-1042.86Show/hide
Query:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFS
        MAA SR++ L L R+++R ++HF  YN R YA RR  D FR N+N+ DP  I +     K  LE+ +RQ  +  L+S
Subjt:  MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFS

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein3.0e-2060.49Show/hide
Query:  SRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIME
        S SE LSL R+LLR  R F DYNIREY+KRR +DGFR N+NL+DPS ++ AYA+ K QL VA+R   VY  + PK K+IME
Subjt:  SRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTCCATCGAGATCGGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCCCGTCACTTCTGCGATTACAACATCAGAGAATACGCCAAACGACGCGCCGT
CGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTTCGTCCATCTCCTCCGCGTACGCTGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCACCGTATACT
CCCTCTTCTCGCCCAAGGTCAAGAGCATCATGGAGGCTCATCACACAAACTGA
mRNA sequenceShow/hide mRNA sequence
ACCTATGTCCTCAACAACTCCAAAACTTTTTCGAGTATTTCATTTTTAGTCCTTCAACTTTCGAAACATATATTTTGAACTCTAAACTATTAGGTGTGTTCTATTTTGAT
TCTTAAACTTTTCCTTCCAACTCCTACCCTCATGTTTAACCCTTTAACTCCCAAAAAAAATAAAAACCCTTTAACTCCCAAATAAATAAAAAAATAAATAAAAAGTTAAT
TTTCTTCTCCATTTTCCATGAATTATTGTAGGCAAAAATGAAGCATTCTCCATGGAGGTTATGGTCGTCAAATTCCCAAAAGTAGAGAATCTCTTTATTACCTGTCCAAT
GAATACCCAACAGAAAAAGAGGTATTAAGCTTTTTTACCATACGATTCTGCGCCATCGTCTTTGCAGTCCTTCGAGAATGGCGGCTCCATCGAGATCGGAATCCCTTTCG
CTTCTTCGCTCTCTGCTCCGTACAGCCCGTCACTTCTGCGATTACAACATCAGAGAATACGCCAAACGACGCGCCGTCGACGGCTTCCGCCATAACCGGAACCTTTCCGA
TCCTTCGTCCATCTCCTCCGCGTACGCTGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCACCGTATACTCCCTCTTCTCGCCCAAGGTCAAGAGCATCATGG
AGGCTCATCACACAAACTGAATACGGAAGCTCTTTTGCCCTTCTTCTTCAAAATGGCCGGCGATGGCAAGGACATAATGGCCTTCTTCATGAAGCAAAGCAACCGGATTT
CTCTCATGCCATAATTACACAAGGATTTTTTTTTTTTTTGGACTGAACTGGGGTTGTATTGTATTGAGAAAATGGCTAGGAGCGCAAACCAAATGGG
Protein sequenceShow/hide protein sequence
MAAPSRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSTVYSLFSPKVKSIMEAHHTN