; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0015277 (gene) of Snake gourd v1 genome

Gene IDTan0015277
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING/U-box superfamily protein
Genome locationLG06:27076162..27076644
RNA-Seq ExpressionTan0015277
SyntenyTan0015277
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571896.1 E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3346.71Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R+E ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+KN   +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

XP_022952293.1 ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata]8.8e-3346.05Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R++ ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+KN   +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

XP_022961194.1 probable E3 ubiquitin-protein ligase ZFP1 [Cucurbita moschata]7.5e-3248.08Show/hide
Query:  ALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTC--GNAIQKMLKRVEFEDME
        AL+  L+  F  Y + +D K +A+ IK KWIEIR + + NAFGRVF LT+TLK+W+V M +          R EDG V +C     I+ ML RV FE++E
Subjt:  ALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTC--GNAIQKMLKRVEFEDME

Query:  GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
         DD +CVIC EE++     +K S+V MPC HVFH +CI +WL +++ CP+CRFQMP
Subjt:  GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

XP_022972455.1 ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita maxima]2.0e-3246.05Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R+E ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+K    +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

XP_023511497.1 ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pepo]4.0e-3346.05Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R++ ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+KN   +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

TrEMBL top hitse value%identityAlignment
A0A6J1BQW1 uncharacterized protein LOC1110047848.3e-2942.94Show/hide
Query:  ALRPYLAFQFQSYRD--YIDAKTIANAIKEKWIEIRNKGNPNA---FGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKMLKRVEFE
        +L  +L+ +F +Y++    +  TI + I   W EI+ +   N     G+V PLT+TL+LW+VV+   E          +  M+PT   A+++MLKRV+ E
Subjt:  ALRPYLAFQFQSYRD--YIDAKTIANAIKEKWIEIRNKGNPNA---FGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKMLKRVEFE

Query:  -DMEGDDQI--CVICFEEIKNIGAEKKNS------IVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
           + DDQI  CVIC E+I ++  EK+ +      +++MPCLHVFHE CIK+WL +SHYCPICRFQMPTD
Subjt:  -DMEGDDQI--CVICFEEIKNIGAEKKNS------IVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

A0A6J1DWD8 RING-H2 finger protein ATL47-like2.9e-2940.94Show/hide
Query:  LRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKG------------NPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKML
        L+ +L++QF+ Y D I+ + + + I   W+ ++ +G            N NAFGRVFPL +TL LW+ V+ ++           +  MVP     I+KML
Subjt:  LRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKG------------NPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKML

Query:  KRVEFEDMEGDD-QICVICFEEIKNIGAEKKNS---IVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        K V+FE++  +    CVIC EEI  +  +  +S   ++++PCLHVFH  CIK+WLNNSHYCP CRFQMPT+
Subjt:  KRVEFEDMEGDD-QICVICFEEIKNIGAEKKNS---IVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

A0A6J1GK53 ERAD-associated E3 ubiquitin-protein ligase HRD1-like4.3e-3346.05Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R++ ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+KN   +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

A0A6J1HDB7 probable E3 ubiquitin-protein ligase ZFP13.6e-3248.08Show/hide
Query:  ALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTC--GNAIQKMLKRVEFEDME
        AL+  L+  F  Y + +D K +A+ IK KWIEIR + + NAFGRVF LT+TLK+W+V M +          R EDG V +C     I+ ML RV FE++E
Subjt:  ALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTC--GNAIQKMLKRVEFEDME

Query:  GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
         DD +CVIC EE++     +K S+V MPC HVFH +CI +WL +++ CP+CRFQMP
Subjt:  GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

A0A6J1I8N9 ERAD-associated E3 ubiquitin-protein ligase HRD1-like9.5e-3346.05Show/hide
Query:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ
        L+  FQ+++  IDA+ +A+A+ E+WIEIR++ N  +  RVFP+T+ L +W +V  +E      + + S     GMVP CG A+ KML+R+E ED    D 
Subjt:  LAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSED---GMVPTCGNAIQKMLKRVEFEDMEGDDQ

Query:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP
        ICVIC +E+K    +     ++MPCLHVFH +CI++WL NSHYCPICRF++P
Subjt:  ICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMP

SwissProt top hitse value%identityAlignment
Q6AXU4 E3 ubiquitin-protein ligase RNF1812.4e-0931.33Show/hide
Query:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        E  + P    A+ + L R      + + + C +C  E      E++ ++++MPC H+FH +CI  WL+ ++ CP+CR ++PTD
Subjt:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

Q7ZW78 E3 ubiquitin-protein ligase RNF1814.1e-0935.44Show/hide
Query:  PTCGNAIQKMLKRVEFEDMEGDDQI-CVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        P    A+ + L  V     + D  + C +C  E      E++ S+ +MPC H+FH  CI  WLN ++ CP+CR ++PTD
Subjt:  PTCGNAIQKMLKRVEFEDMEGDDQI-CVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

Q8LPN7 E3 ubiquitin-protein ligase RING1-like5.4e-0932.93Show/hide
Query:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        G  P   +AI  +   +V  + ++ +   C +C +E      E  + + +MPC HVFH+ C+  WL   + CP+CRF++PTD
Subjt:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

Q940T5 E3 ubiquitin-protein ligase RDUF27.1e-0936.59Show/hide
Query:  GMVPTCGNAIQKMLKRVEFEDME-GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        G  P   +AI+  L RVE  D   G +  C +C E       E +    +MPC H+FH+ CI  WL+  + CP+CRF++P++
Subjt:  GMVPTCGNAIQKMLKRVEFEDME-GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

Q9CY62 E3 ubiquitin-protein ligase RNF1811.4e-0932.53Show/hide
Query:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        E  + P    A+ + L R      + D + C +C  E      E + ++++MPC H+FH +CI  WL+ ++ CP+CR ++PTD
Subjt:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

Arabidopsis top hitse value%identityAlignment
AT1G14200.1 RING/U-box superfamily protein2.3e-1033.73Show/hide
Query:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        + G  P   + ++ M + V  ED E     C IC +E       K +   +MPC H FH  C++EWL     CP+CR++MP +
Subjt:  EDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

AT3G19950.1 RING/U-box superfamily protein3.8e-1032.93Show/hide
Query:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        G  P   +AI  +   +V  + ++ +   C +C +E      E  + + +MPC HVFH+ C+  WL   + CP+CRF++PTD
Subjt:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

AT5G01980.1 RING/U-box superfamily protein1.1e-1227.27Show/hide
Query:  TALRPYLAFQFQSYRDY--IDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSV-VMLHEEQRRRLLDIRSED-----GMVPTCGNAIQKMLKR
        T  R YLA   +SY      D+  +  + +++ IE R+  + N F  +  L  +    +V   L E     LL+  +E      G  P   + ++ + + 
Subjt:  TALRPYLAFQFQSYRDY--IDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSV-VMLHEEQRRRLLDIRSED-----GMVPTCGNAIQKMLKR

Query:  VEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        +  E+      +C IC E         +N   ++PCLH++H HCI  WL+  + CP+CR+++PTD
Subjt:  VEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

AT5G08139.1 RING/U-box superfamily protein3.8e-1034.15Show/hide
Query:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        G+ PT  + +  + +  +E E+ +    +C +C +E+ NIG    N  V++PC H +H  CI  WL   + CP+CR+++PTD
Subjt:  GMVPTCGNAIQKM-LKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD

AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein5.0e-1036.59Show/hide
Query:  GMVPTCGNAIQKMLKRVEFEDME-GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD
        G  P   +AI+  L RVE  D   G +  C +C E       E +    +MPC H+FH+ CI  WL+  + CP+CRF++P++
Subjt:  GMVPTCGNAIQKMLKRVEFEDME-GDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATAACGGCATTACGACCATACTTGGCATTTCAATTCCAAAGTTATAGAGACTACATTGACGCTAAGACTATAGCAAATGCGATAAAAGAGAAGTGGATTGAAAT
ACGAAATAAGGGAAATCCGAATGCGTTTGGGAGAGTTTTTCCTCTTACAATTACCCTGAAATTATGGAGCGTTGTGATGTTGCACGAGGAACAACGACGACGGTTGTTGG
ATATAAGGAGTGAAGATGGAATGGTTCCGACTTGTGGTAATGCTATTCAGAAGATGCTAAAGAGAGTGGAATTTGAGGATATGGAAGGTGATGATCAAATTTGTGTAATT
TGCTTTGAGGAGATAAAAAATATAGGGGCAGAGAAAAAGAATTCAATTGTGAAAATGCCTTGCTTGCATGTGTTTCATGAGCATTGCATTAAGGAGTGGTTGAACAATAG
CCATTACTGTCCCATTTGCAGATTTCAAATGCCTACAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATAACGGCATTACGACCATACTTGGCATTTCAATTCCAAAGTTATAGAGACTACATTGACGCTAAGACTATAGCAAATGCGATAAAAGAGAAGTGGATTGAAAT
ACGAAATAAGGGAAATCCGAATGCGTTTGGGAGAGTTTTTCCTCTTACAATTACCCTGAAATTATGGAGCGTTGTGATGTTGCACGAGGAACAACGACGACGGTTGTTGG
ATATAAGGAGTGAAGATGGAATGGTTCCGACTTGTGGTAATGCTATTCAGAAGATGCTAAAGAGAGTGGAATTTGAGGATATGGAAGGTGATGATCAAATTTGTGTAATT
TGCTTTGAGGAGATAAAAAATATAGGGGCAGAGAAAAAGAATTCAATTGTGAAAATGCCTTGCTTGCATGTGTTTCATGAGCATTGCATTAAGGAGTGGTTGAACAATAG
CCATTACTGTCCCATTTGCAGATTTCAAATGCCTACAGATTAA
Protein sequenceShow/hide protein sequence
MSITALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVI
CFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD